BASiCS_Result: The BASiCS_Result class

In BASiCS: Bayesian Analysis of Single-Cell Sequencing data

Description

Container of results for a single test (HVG/LVG/DE). This should be an abstract class (but this is R so no) and shouldn't be directly instantiated. Defines a very small amount of common behaviour for BASiCS_ResultDE and BASiCS_ResultVG.

Slots

Table

Tabular results for each gene.

Name

The name of the test performed (typically "Mean", "Disp" or "ResDisp")

ProbThreshold

Posterior probability threshold used in differential test.

EFDR,EFNR

Expected false discovery and expected false negative rates for differential test.

Extra

Additional objects for class flexibility.

BASiCS documentation built on April 16, 2021, 6 p.m.