BASiCS_ResultVG: The BASiCS_ResultVG class

In BASiCS: Bayesian Analysis of Single-Cell Sequencing data

Description

Container of results for a single HVG/LVG test.

Slots

Method

Character value detailing whether the test performed using a threshold directly on epsilon values (Method="Epsilon"), variance decomposition (Method="Variance") or percentiles of epsilon (Method="Percentile").

RowData

Optional DataFrame containing additional information about genes used in the test.

EFDRgrid,EFNRgrid

Grid of EFDR and EFNR values calculated before thresholds were fixed.

Threshold

Threshold used to calculate tail posterior probabilities for the HVG or LVG decision rule.

ProbThresholds

Probability thresholds used to calculate EFDRGrid and EFNRGrid.

ProbThreshold

Posterior probability threshold used in the HVG/LVG decision rule.

BASiCS documentation built on April 16, 2021, 6 p.m.