Man pages for BGmix
Bayesian models for differential gene expression
| BGmix | Fit the BGmix differential expression model. |
| BGmix-package | BGmix fits a variety of Bayesian hierarchical models for... |
| calcFDR | Estimate the FDR (false discovery rate) and related... |
| ccParams | Read posterior means and classification probabilities from... |
| ccPred | Read predictive quantities output from BGmix. |
| ccSummary | Read summary of BGmix output |
| ccTrace | Read trace files from BGmix |
| EstimatePi0 | Proportion of the variables under the null hypothesis |
| FDRforTailPP | FDR for tail posterior probability |
| FDRplotTailPP | Plot of FDR for tail posterior probability |
| histTailPP | Histogram plot for tail posterior probability |
| plotBasic | Basic plots of BGmix parameters and data. |
| plotCompare | Scatter plot with equal axes. |
| plotFDR | Plot estimated FDR etc. for BGmix output. |
| plotMixDensity | Plot predictive density of data. |
| plotPredChecks | Plots of predictive checks for mixture prior. |
| plotTrace | Trace plots for BGmix output. |
| readBGX | Reads output from BGX package, for input to BGmix. |
| ss | Sample variance of log gene expression under two conditions |
| TailPP | Tail posterior probability for BGmix output. |
| ybar | Mean log gene expression under two conditions |
