# Basic plots of BGmix parameters and data.

### Description

Plots gene effects and variances versus their corresponding data sufficient statistics (to show the effect of smoothing and shrinkage). Also plots "volcano plots": posterior probabilities of being classified in each mixture component versus the log fold change parameters.

### Usage

1 |

### Arguments

`res` |
list object output from 'ccParams' |

`ybar` |
ybar data (see |

`ss` |
ss data (see |

`q.mean` |
logical. Include mean plot? |

`q.diff` |
logical. Include log fold change plot? |

`q.sig` |
logical. Include variance plot? |

`q.volcano` |
logical. Include volcana plot (posterior classification v. fold change)? |

### Details

Note this plotting function is designed for model output from the unpaired differential expression design.

### Value

No value is returned to **R**. Results from BGmix model are output to files.

### Author(s)

Alex Lewin

### Examples

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