old_boxplot_cluster_gex: (DEPRECATED) Boxplot of clustered expression levels
In BPRMeth: Model higher-order methylation profiles

Description Usage Arguments Value Author(s) See Also Examples

(DEPRECATED) boxplot_cluster_gex creates a boxplot of clustered gene expression levels which depend on the clustered methylation profiles. Each colour denotes a different cluster.

old_boxplot_cluster_gex(
  bpr_cluster_obj,
  gex,
  main_lab = "Gene expression levels"
)

`bpr_cluster_obj`	The output of the `bpr_cluster_wrap` function.
`gex`	The vector of gene expression data for each promoter region.
`main_lab`	The title of the plot

The figure to be plotted in the device.

C.A.Kapourani C.A.Kapourani@ed.ac.uk

old_plot_cluster_prof, old_plot_fitted_profiles

# Cluster methylation profiles using 4 RBFs
obs <- meth_data
basis <- create_rbf_object(M = 4)
res   <- bpr_cluster_wrap(x = obs, K = 3, em_max_iter = 2, opt_itnmax = 3,
                          init_opt_itnmax = 2, is_parallel = FALSE)

# Create the plot
old_boxplot_cluster_gex(bpr_cluster_obj = res, gex = gex_data)