old_plot_cluster_prof: (DEPRECATED) Plot of clustered methylation profiles

Description Usage Arguments Value Author(s) See Also Examples

View source: R/deprecated_functions.R

Description

(DEPRECATED) plot_cluster_prof creates a plot of cluster methylation profiles, where each colour denotes a different cluster.

Usage

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old_plot_cluster_prof(
  bpr_cluster_obj,
  main_lab = "Clustered methylation profiles"
)

Arguments

bpr_cluster_obj

The output of the bpr_cluster_wrap function.

main_lab

The title of the plot

Value

The figure to be plotted in the device.

Author(s)

C.A.Kapourani C.A.Kapourani@ed.ac.uk

See Also

old_plot_fitted_profiles, old_boxplot_cluster_gex

Examples

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# Cluster methylation profiles using 4 RBFs
obs <- meth_data
basis <- create_rbf_object(M = 4)
res   <- bpr_cluster_wrap(x = obs, K = 3, em_max_iter = 2, opt_itnmax = 3,
                          init_opt_itnmax = 2, is_parallel = FALSE)

# Create the plot
old_plot_cluster_prof(bpr_cluster_obj = res)

BPRMeth documentation built on Nov. 8, 2020, 5:54 p.m.