Files in BPRMeth
Model higher-order methylation profiles

README.md
NAMESPACE
DESCRIPTION
R/read_encode_cgi.R R/plotting_functions.R R/read_bs_bismark_cov.R R/read_rna_encode_caltech.R R/pool_bs_seq_rep.R R/data.R R/BPRMeth_package.R R/bpr_cluster_wrap.R R/basis_functions.R R/create_prom_region.R R/bpr_optimize.R R/read_chrom_size.R R/preprocess_bs_seq.R R/bpr_predict_wrap.R R/process_haib_caltech_wrap.R R/preprocess_final_HTS_data.R R/bpr.R R/regression_model_gex.R R/read_bs_encode_haib.R R/utils.R R/design_matrix.R R/evaluate_functions.R R/create_methyl_region.R
data/meth_data.rda
data/gex_data.rda
vignettes/model-bpr.pdf
vignettes/BPRMeth_vignette-concordance.tex
vignettes/BPRMeth_vignette.Rnw
vignettes/BPRMeth_vignette.bib
man/bpr_predict_wrap.Rd man/eval_functions.Rd man/preprocess_final_HTS_data.Rd man/create_methyl_region.Rd man/create_prom_region.Rd man/read_rna_encode_caltech.Rd man/read_bs_encode_haib.Rd man/read_bs_bismark_cov.Rd man/process_haib_caltech_wrap.Rd man/plot_scatter_gex.Rd man/train_model_gex.Rd man/meth_data.Rd man/read_encode_cgi.Rd man/read_chrom_size.Rd man/plot_fitted_profiles.Rd man/create_basis.Rd man/plot_cluster_prof.Rd man/pool_bs_seq_rep.Rd man/preprocess_bs_seq.Rd man/BPRMeth.Rd man/bpr_optimize.Rd man/predict_model_gex.Rd man/gex_data.Rd man/bpr_cluster_wrap.Rd man/boxplot_cluster_gex.Rd tests/testthat.R tests/testthat/test-basis.R tests/testthat/test-design_matrix.R tests/testthat/test-utils.R tests/testthat/test-bpr.R tests/testthat/test-eval_function.R
build/vignette.rds
inst/NEWS.Rd
inst/doc/BPRMeth_vignette.R inst/doc/BPRMeth_vignette.pdf
inst/doc/BPRMeth_vignette.Rnw
inst/extdata/rrbs.bed
inst/extdata/rnaseq.bed
inst/extdata/hg19.chr.sizes
BPRMeth documentation built on Nov. 17, 2017, 10:13 a.m.