Files in BPRMeth
Model higher-order methylation profiles

DESCRIPTION
README.md
NAMESPACE
inst/NEWS.Rd
inst/doc/BPRMeth_vignette.Rmd inst/doc/BPRMeth_vignette.R
inst/doc/BPRMeth_vignette.html
inst/figures/workflow.png
inst/figures/model.png
inst/figures/bprmeth-workflow.png
inst/extdata/rnaseq.bed
inst/extdata/dummy_expr.bed
inst/extdata/dummy_met.bed
inst/extdata/dummy_anno.bed
inst/extdata/hg19.chr.sizes
inst/extdata/rrbs.bed
vignettes/BPRMeth_vignette.Rmd R/infer_profiles_mle.R R/data.R R/deprecated_functions.R R/infer_profiles_vb.R R/predict_expr.R R/BPRMeth_package.R R/utils.R R/RcppExports.R R/infer_profiles_gibbs.R R/plotting_functions.R R/model_log_likelihood.R R/design_matrix.R R/process_data.R R/cluster_profiles_mle.R R/cluster_profiles_vb.R R/deprecated_process_functions.R R/basis_functions.R
src/Makevars.win
src/RcppExports.cpp
src/model_likelihood.cpp
src/Makevars
man/BPRMeth.Rd man/infer_profiles_mle.Rd man/bpr_predict_wrap.Rd man/create_anno_region.Rd man/preprocess_final_HTS_data.Rd man/process_haib_caltech_wrap.Rd man/eval_functions.Rd man/cluster_profiles_mle.Rd man/meth_data.Rd man/predict_expr.Rd man/binomial_data.Rd man/beta_data.Rd man/read_met.Rd man/encode_met.Rd man/pool_bs_seq_rep.Rd man/old_plot_cluster_prof.Rd man/old_plot_fitted_profiles.Rd man/bpr_cluster_wrap.Rd man/create_basis.Rd man/infer_profiles_gibbs.Rd man/read_expr.Rd man/preprocess_bs_seq.Rd man/bernoulli_data.Rd man/create_region_object.Rd man/bpr_optimize.Rd man/old_boxplot_cluster_gex.Rd man/gaussian_data.Rd man/plot_infer_profiles.Rd man/read_anno.Rd man/read_chrom_size.Rd man/gex_data.Rd man/model_log_likelihood.Rd man/inner_predict_model_expr.Rd man/inner_train_model_expr.Rd man/plot_predicted_expr.Rd man/read_rna_encode_caltech.Rd man/boxplot_cluster_expr.Rd man/design_matrix.Rd man/read_bs_encode_haib.Rd man/encode_expr.Rd man/cluster_profiles_vb.Rd man/plot_cluster_profiles.Rd man/infer_profiles_vb.Rd
build/vignette.rds
tests/testthat.R tests/testthat/test-basis.R tests/testthat/test-utils.R tests/testthat/test-likelihoods.R tests/testthat/test-design_matrix.R tests/testthat/test-eval_function.R
data/bernoulli_data.rda
data/gaussian_data.rda
data/meth_data.rda
data/encode_met.rda
data/binomial_data.rda
data/encode_expr.rda
data/gex_data.rda
data/beta_data.rda
BPRMeth documentation built on May 2, 2018, 2:53 a.m.