Files in BUMHMM

Computational pipeline for computing probability of modification from structure probing experiment data

README.md

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

data/docFile.RData

data/seq.RData

data/dorFile.RData

data/covFile.RData

data/se.RData

R/betaParamsEM.R R/computeProbs.R R/stabiliseVariance.R R/selectNuclPos.R R/nuclPerm.R R/computeStretches.R R/betaParamsMStep.R R/scaleDOR.R R/hmmFwbw.R R/findPatternPos.R

vignettes/toyEx_structureProbing.png

vignettes/BUMHMM.Rnw

vignettes/BUMHMM-concordance.tex

vignettes/vignette.bib

man/seq.Rd man/se.Rd man/scaleDOR.Rd man/findPatternPos.Rd man/computeStretches.Rd man/selectNuclPos.Rd man/nuclPerm.Rd man/covFile.Rd man/stabiliseVariance.Rd man/computeProbs.Rd man/dorFile.Rd man/docFile.Rd tests/testthat.R tests/testthat/test_computeProbs.R tests/testthat/test_findPatternPos.R tests/testthat/test_stabiliseVariance.R tests/testthat/test_scaleDOR.R tests/testthat/test_selectNuclPos.R tests/testthat/test_computeStretches.R tests/testthat/test_nuclPerm.R

inst/NEWS.Rd

inst/CITATION

inst/doc/BUMHMM.Rnw

inst/doc/BUMHMM.pdf inst/doc/BUMHMM.R

BUMHMM documentation built on Nov. 8, 2020, 5:13 p.m.