covFile: Example coverage data set.
In BUMHMM: Computational pipeline for computing probability of modification from structure probing experiment data
Description
Usage
Format
Value
References
Description
A matrix containing 1800x6 entries of per nucleotide coverage information
from structure probing experiments.
This matrix is provided as a reference for creating a
SummarizedExperiment object for storing all structure probing data
used by the BUMHMM package. See se for the
example code.
Usage
1
Format
A matrix containing the coverage information for each nucleotide
position of a ribosomal RNA 18S obtained in a structure probing experiment
using DMS as a probe, where:
- 1st column
control experimental replicate
- 2nd column
control experimental replicate
- 3rd column
control experimental replicate
- 4th column
treatment experimental replicate
- 5th column
treatment experimental replicate
- 6th column
treatment experimental replicate
Value
Coverage information per nucleotide.
References
Hector, R. D. et al. "Snapshots of pre-rRNA structural flexibility reveal
eukaryotic 40S assembly dynamics at nucleotide resolution." Nucleic acids
research (2014).
BUMHMM documentation built on Nov. 8, 2020, 5:13 p.m.
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Description Usage Format Value References
Description
A matrix containing 1800x6 entries of per nucleotide coverage information from structure probing experiments.
This matrix is provided as a reference for creating a
SummarizedExperiment object for storing all structure probing data
used by the BUMHMM package. See se for the
example code.
Usage
1 |
Format
A matrix containing the coverage information for each nucleotide position of a ribosomal RNA 18S obtained in a structure probing experiment using DMS as a probe, where:
- 1st column
control experimental replicate
- 2nd column
control experimental replicate
- 3rd column
control experimental replicate
- 4th column
treatment experimental replicate
- 5th column
treatment experimental replicate
- 6th column
treatment experimental replicate
Value
Coverage information per nucleotide.
References
Hector, R. D. et al. "Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution." Nucleic acids research (2014).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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