nuclPerm: Function to create nucleobase patterns.
In BUMHMM: Computational pipeline for computing probability of modification from structure probing experiment data
Description
Usage
Arguments
Details
Value
Error
Author(s)
References
See Also
Examples
Description
This function creates all permutations of 4 nucleobases (A, T, G, C) of
length n.
Usage
1
nuclPerm(n)
Arguments
n
Length of the pattern.
Details
This function uses gtools::permutations().
Value
A vector of characters with each element being a nucleobase pattern of
length n.
Error
The following error is returned if:
"The length of patterns provided is not a positive number."
the provided length of patterns to be generated is not positive.
Author(s)
Alina Selega, Sander Granneman, Guido Sanguinetti
References
Selega et al. "Robust statistical modeling improves sensitivity of
high-throughput RNA structure probing experiments", Nature Methods (2016).
See Also
Examples
1
nuclPerm(3)
BUMHMM documentation built on Nov. 8, 2020, 5:13 p.m.
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Description Usage Arguments Details Value Error Author(s) References See Also Examples
Description
This function creates all permutations of 4 nucleobases (A, T, G, C) of
length n.
Usage
1 | nuclPerm(n)
|
Arguments
n |
Length of the pattern. |
Details
This function uses gtools::permutations().
Value
A vector of characters with each element being a nucleobase pattern of
length n.
Error
The following error is returned if:
"The length of patterns provided is not a positive number." the provided length of patterns to be generated is not positive.
Author(s)
Alina Selega, Sander Granneman, Guido Sanguinetti
References
Selega et al. "Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments", Nature Methods (2016).
See Also
Examples
1 | nuclPerm(3)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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