Computational pipeline for computing probability of modification from structure probing experiment data

computeProbs | Function to compute posterior probabilities of modification... |

computeStretches | Function to compute continuous stretches of nucleotide... |

covFile | Example coverage data set. |

docFile | Example drop-off count data set. |

dorFile | Example drop-off rate data set. |

findPatternPos | Function to find positions of the nucleotide patterns in the... |

nuclPerm | Function to create nucleobase patterns. |

scaleDOR | Function to scale drop-off rates across replicates to a... |

se | Example RNA structure probing data set. |

selectNuclPos | Function to compute selections of nucleotide positions. |

seq | Example genomic sequence string. |

stabiliseVariance | Function to reduce variance of LDRs as a function of... |

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