|computeProbs||Function to compute posterior probabilities of modification...|
|computeStretches||Function to compute continuous stretches of nucleotide...|
|covFile||Example coverage data set.|
|docFile||Example drop-off count data set.|
|dorFile||Example drop-off rate data set.|
|findPatternPos||Function to find positions of the nucleotide patterns in the...|
|nuclPerm||Function to create nucleobase patterns.|
|scaleDOR||Function to scale drop-off rates across replicates to a...|
|se||Example RNA structure probing data set.|
|selectNuclPos||Function to compute selections of nucleotide positions.|
|seq||Example genomic sequence string.|
|stabiliseVariance||Function to reduce variance of LDRs as a function of...|
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