Man pages for BUMHMM
Computational pipeline for computing probability of modification from structure probing experiment data
| computeProbs | Function to compute posterior probabilities of modification... |
| computeStretches | Function to compute continuous stretches of nucleotide... |
| covFile | Example coverage data set. |
| docFile | Example drop-off count data set. |
| dorFile | Example drop-off rate data set. |
| findPatternPos | Function to find positions of the nucleotide patterns in the... |
| nuclPerm | Function to create nucleobase patterns. |
| scaleDOR | Function to scale drop-off rates across replicates to a... |
| se | Example RNA structure probing data set. |
| selectNuclPos | Function to compute selections of nucleotide positions. |
| seq | Example genomic sequence string. |
| stabiliseVariance | Function to reduce variance of LDRs as a function of... |
