API for BaseSpaceR
R SDK for BaseSpace RESTful API

Global functions
$,Collection-method	Man page
$,Item-method	Man page
$,Response-method	Man page
.FilesByResource	Source code
.countFilesByResource	Source code
.extractStatus	Source code
.forceIntegers	Source code
.onAttach	Source code
.printFail	Source code
.queryResource	Source code
.selectFromItemList	Source code
.showItem	Source code
.transpose_items	Source code
AppAuth	Man page Source code
AppAuth-class	Man page
AppResults	Man page
AppResults,AppAuth-method	Man page
AppResults,AppResultsSummary-method	Man page
AppResults,missing-method	Man page
AppResults-class	Man page
AppResultsSummary-class	Man page
AppSessionAuth-class	Man page
AppSessions	Man page
AppSessions,AppAuth-method	Man page
AppSessions,AppResults-method	Man page
AppSessions-class	Man page
BaseSpaceR	Man page
BaseSpaceR-package	Man page
Collection-class	Man page
CollectionFromJList	Source code
DateCreated	Man page
DateCreated,Collection-method	Man page
DateCreated,Item-method	Man page
DateCreated,Response-method	Man page
DisplayedCount	Man page
DisplayedCount,Collection-method	Man page
DisplayedCount,Item-method	Man page
DisplayedCount,Response-method	Man page
Files	Man page
Files,AppAuth-method	Man page
Files,FilesSummary-method	Man page
Files,missing-method	Man page
Files-class	Man page
FilesSummary-class	Man page
GET,ServiceURI-method	Man page
Genomes	Man page
Genomes,AppAuth-method	Man page
Genomes,GenomesSummary-method	Man page
Genomes,missing-method	Man page
Genomes-class	Man page
GenomesSummary-class	Man page
Href	Man page
Href,Collection-method	Man page
Href,Item-method	Man page
Href,Response-method	Man page
HrefBaseSpaceUI	Man page
HrefBaseSpaceUI,Collection-method	Man page
HrefBaseSpaceUI,Item-method	Man page
HrefBaseSpaceUI,Response-method	Man page
Id	Man page
Id,Collection-method	Man page
Id,Item-method	Man page
Id,Response-method	Man page
Item-class	Man page
ItemFromJList	Source code
Items	Man page
Items,Collection-method	Man page
Items,Item-method	Man page
Items,Response-method	Man page
Limit	Man page
Limit,Collection-method	Man page
Limit,Item-method	Man page
Limit,Response-method	Man page
Name	Man page
Name,Collection-method	Man page
Name,Item-method	Man page
Name,Response-method	Man page
Offset	Man page
Offset,Collection-method	Man page
Offset,Item-method	Man page
Offset,Response-method	Man page
POST,ServiceURI-method	Man page
POSTForm,ServiceURI-method	Man page
Projects	Man page
Projects,AppAuth-method	Man page
Projects,ProjectsSummary-method	Man page
Projects,missing-method	Man page
Projects-class	Man page
ProjectsSummary-class	Man page
Response	Man page
Response-class	Man page
ResponseStatus	Man page Source code
ResponseStatus-class	Man page
Runs	Man page
Runs,AppAuth-method	Man page
Runs,RunsSummary-method	Man page
Runs,missing-method	Man page
Runs-class	Man page
RunsSummary-class	Man page
Samples	Man page
Samples,AppAuth-method	Man page
Samples,SamplesSummary-method	Man page
Samples,missing-method	Man page
Samples-class	Man page
SamplesSummary-class	Man page
ServiceURI	Man page Source code
ServiceURI-class	Man page
SortBy	Man page
SortBy,Collection-method	Man page
SortBy,Item-method	Man page
SortBy,Response-method	Man page
SortDir	Man page
SortDir,Collection-method	Man page
SortDir,Item-method	Man page
SortDir,Response-method	Man page
Status	Man page
Status,Collection-method	Man page
Status,Item-method	Man page
Status,Response-method	Man page
TotalCount	Man page
TotalCount,Collection-method	Man page
TotalCount,Item-method	Man page
TotalCount,Response-method	Man page
UserOwnedBy	Man page
UserOwnedBy,Collection-method	Man page
UserOwnedBy,Item-method	Man page
UserOwnedBy,Response-method	Man page
Users	Man page Man page
Users,AppAuth-method	Man page
Users,Response-method	Man page
Users,missing-method	Man page
Users-class	Man page
[,Collection-method	Man page
[,Response-method	Man page
[[,Collection,numeric-method	Man page
[[,Response,ANY-method	Man page
aAuth	Man page
appResultCollection	Man page Source code
appResultCollection-class	Man page
appResultItem	Man page Source code
appResultItem-class	Man page
appSessionItem	Man page Source code
appSessionItem-class	Man page
as.character,staticHref-method	Man page
as.list,Collection-method	Man page
as.list,Item-method	Man page
as.list,Response-method	Man page
asBamFile	Source code
as_id	Source code
auth	Man page
auth,Href-method	Man page
auth,Response-method	Man page
authNativeClient	Man page Source code
authWebClient	Man page Source code
countAppResults	Man page
countAppResults,AppAuth-method	Man page
countAppResults,Projects-method	Man page
countAppResults,ProjectsSummary-method	Man page
countAppResults,Response-method	Man page
countAppSessions	Man page
countAppSessions,AppAuth-method	Man page
countAppSessions,Response-method	Man page
countFiles	Man page
countFiles,AppAuth-method	Man page
countFiles,AppResults-method	Man page
countFiles,AppResultsSummary-method	Man page
countFiles,Response-method	Man page
countFiles,Runs-method	Man page
countFiles,RunsSummary-method	Man page
countFiles,Samples-method	Man page
countFiles,SamplesSummary-method	Man page
countGenomes	Man page
countProjects	Man page
countProjects,AppAuth-method	Man page
countProjects,Response-method	Man page
countRuns	Man page
countRuns,AppAuth-method	Man page
countRuns,Response-method	Man page
countSamples	Man page
countSamples,AppAuth-method	Man page
countSamples,Projects-method	Man page
countSamples,ProjectsSummary-method	Man page
countSamples,Response-method	Man page
createAppResults	Man page
createAppResults,AppAuth-method	Man page
createAppResults,Projects-method	Man page
createProject	Man page
createProject,AppAuth-method	Man page
fileCollection	Man page Source code
fileCollection-class	Man page
fileItem	Man page Source code
fileItem-class	Man page
genomeCollection	Man page Source code
genomeCollection-class	Man page
genomeItem	Man page Source code
genomeItem-class	Man page
getBAMs	Man page
getBAMs,AppResults-method	Man page
getCoverage	Man page
getCoverage,AppAuth-method	Man page
getCoverageStats	Man page
getCoverageStats,AppAuth-method	Man page
getFiles	Man page
getFiles,AppAuth-method	Man page
getIndexedBam	Man page Source code
getVariantSet	Man page
getVariantSet,AppAuth-method	Man page
getVariants	Man page
getVariants,AppAuth-method	Man page
hasAccess	Man page
hasAccess,AppAuth-method	Man page
id_from_href	Source code
initializeAuth	Man page
initializeAuth,AppAuth-method	Man page
length,Collection-method	Man page
length,Item-method	Man page
length,Response-method	Man page
listAppResults	Man page
listAppResults,AppAuth-method	Man page
listAppResults,Projects-method	Man page
listAppSessions	Man page
listAppSessions,AppAuth-method	Man page
listFiles	Man page
listFiles,AppAuth-method	Man page
listFiles,AppResults-method	Man page
listFiles,AppResultsSummary-method	Man page
listFiles,Runs-method	Man page
listFiles,RunsSummary-method	Man page
listFiles,Samples-method	Man page
listFiles,SamplesSummary-method	Man page
listGenomes	Man page Man page
listGenomes,AppAuth-method	Man page Man page
listGenomes,Response-method	Man page
listProjects	Man page
listProjects,AppAuth-method	Man page
listProjects,Response-method	Man page
listRuns	Man page
listRuns,AppAuth-method	Man page
listRuns,Response-method	Man page
listSamples	Man page
listSamples,AppAuth-method	Man page
listSamples,Projects-method	Man page
list_len	Source code
make_resource	Source code
named_list	Source code
performOAuth	Man page Source code
projectCollection	Man page Source code
projectCollection-class	Man page
projectItem	Man page Source code
projectItem-class	Man page
putFiles	Man page
putFiles,AppAuth-method	Man page
query	Source code
requestAccessToken	Man page
requestAccessToken,AppAuth-method	Man page
runCollection	Man page Source code
runCollection-class	Man page
runItem	Man page Source code
runItem-class	Man page
sampleCollection	Man page Source code
sampleCollection-class	Man page
sampleItem	Man page Source code
sampleItem-class	Man page
show,Collection-method	Man page
show,Href-method	Man page
show,Item-method	Man page
show,Response-method	Man page
show,ResponseStatus-method	Man page
show,ServiceURI-method	Man page
show,staticHref-method	Man page
staticHref	Source code
tokenizeURI	Source code
transpose_list	Source code
updateAppSessions	Man page
updateAppSessions,AppAuth-method	Man page
uri	Man page
uri,ServiceURI-method	Man page
userItem	Man page Source code
userItem-class	Man page