Files in BiGGR
Constraint based modeling in R using metabolic reconstruction databases
.BBSoptions
NAMESPACE
DESCRIPTION
BiGGR.Rproj
LICENSE
build/vignette.rds
data/Recon2.rda
data/M.barkeri_iAF692.rda
data/E.coli_textbook.rda
data/S.cerevisiae_iND750.rda
data/H.pylori_ilT341.rda
data/datalist
data/E.coli_iJR904.rda
data/Glycolysis.rda
data/H.sapiens_Recon_1.rda
data/P.putida_iJN746.rda
data/lying.tunell.data.rda
data/S.aureus_iSB619.rda
data/E.coli_iAF1260.rda
data/M.tuberculosis_iNJ661.rda
R/BiGGR-internal.R
R/buildSBMLFromPathways.R
R/buildSBMLFromGenes.R
R/buildSBMLFromReactionIDs.R
R/extractGeneAssociations.R
R/getRates.R
R/buildSBMLFromBiGG.R
R/createLIMFromBiGG.R
R/getPathwaysForSBML.R
R/sampleFluxEnsemble.R
R/gprMapping.R
R/gprMappingAvg.R
R/extractPathways.R
R/rmvSpliceVariant.R
R/createLIMFromSBML.R
R/sbml2hyperdraw.R
vignettes/BiGGR.bib
vignettes/BiGGR.Rnw
man/createLIMFromBiGG.Rd
man/gprMapping.Rd
man/extractPathways.Rd
man/E.coli_iJR904.Rd
man/S.aureus_iSB619.Rd
man/E.coli_iAF1260.Rd
man/rmvSpliceVariant.Rd
man/gprMappingAvg.Rd
man/buildSBMLFromBiGG.Rd
man/lying.tunell.data.Rd
man/buildSBMLFromReactionIDs.Rd
man/M.tuberculosis_iNJ661.Rd
man/Recon2.Rd
man/extractGeneAssociations.Rd
man/E.coli_textbook.Rd
man/H.sapiens_Recon1.Rd
man/sampleFluxEnsemble.Rd
man/P.putida_iJN746.Rd
man/createLIMFromSBML.Rd
man/Glycolysis.Rd
man/H.pylori_ilT341.Rd
man/BiGGR-package.Rd
man/S.cerevisiae_iND750.Rd
man/buildSBMLFromGenes.Rd
man/sbml2hyperdraw.Rd
man/buildSBMLFromPathways.Rd
man/getRates.Rd
man/M.barkeri_iAF692.Rd
man/BiGGR-internal.Rd
man/getPathwaysForSBML.Rd
inst/COPYRIGHTS
inst/NEWS.Rd
inst/CITATION
inst/doc/BiGGR.pdf
inst/doc/BiGGR.R
inst/doc/BiGGR.Rnw
inst/extdata/Glycolysis_TCA_recon1_reactionIDs.txt
inst/extdata/Reactions.txt
inst/extdata/Gene_Symbol_Entrez_Foldchanges.csv
inst/extdata/Glycolysis_TCA_recon2_reactionIDs.txt
inst/extdata/brainmodel_reactions.txt
inst/extdata/Glycolysis_TCA.LIM
inst/extdata/Glycolysis.LIM
