clusterSitesToGR: A function to obtain a 'GRanges' object of CpG clusters from...
In BiSeq: Processing and analyzing bisulfite sequencing data
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
This function allows to get the start and end positions of CpG clusters
from a BSraw or BSrel object, when there is a cluster.id
column in the rowRanges slot.
Usage
1
clusterSitesToGR(object)
Arguments
object
A BSraw or BSrel object with a
cluster.id column in the rowRanges slot. Usually the
output of clusterSites.
Value
An object of class GRanges is returned.
Author(s)
Katja Hebestreit
See Also
Examples
1
2
3
4
data(rrbs)
rrbs.clustered <- clusterSites(rrbs)
clusterSitesToGR(rrbs.clustered)
BiSeq documentation built on Nov. 8, 2020, 8:05 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
This function allows to get the start and end positions of CpG clusters
from a BSraw or BSrel object, when there is a cluster.id
column in the rowRanges slot.
Usage
1 | clusterSitesToGR(object)
|
Arguments
object |
A |
Value
An object of class GRanges is returned.
Author(s)
Katja Hebestreit
See Also
Examples
1 2 3 4 | data(rrbs)
rrbs.clustered <- clusterSites(rrbs)
clusterSitesToGR(rrbs.clustered)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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