Files in BiSeq
Processing and analyzing bisulfite sequencing data

.BBSoptions
NAMESPACE
DESCRIPTION
build/vignette.rds
data/predictedMeth.RData
data/betaResultsNull.RData
data/DMRs.RData
data/promoters.RData
data/vario.RData
data/betaResults.RData
data/datalist
data/rrbs.RData
R/readBismark.R R/annotateGRanges.R R/predictMeth.R R/clusterSitesToGR.R R/plotMethMap.R R/logisticRegression.R R/limitCov.R R/plotSmoothMeth.R R/writeBED.R R/AllGenerics.R R/plotMeth.R R/plotBindingSites.R R/globalTest.R R/filterByCov.R R/findDMRs.R R/testClusters.R R/methods-BSraw.R R/methods-BSrel.R R/trimClusters.R R/covStatistics.R R/estLocCor.R R/summarizeRegions.R R/smoothVariogram.R R/betaRegression.R R/makeVariogram.R R/rawToRel.R R/clusterSites.R R/binomLikelihoodSmooth.R R/filterBySharedRegions.R R/AllClasses.R R/compareTwoSamples.R R/categorialColors.R R/covBoxplots.R R/variogram.R
vignettes/BiSeq.bib
vignettes/igv_snapshot.png
vignettes/BiSeq.Rnw
vignettes/unsrturl.bst
vignettes/igv_snapshot_smoothed.png
man/BSrel-class.Rd man/predictedMeth.Rd man/estLocCor.Rd man/plotMethMap.Rd man/annotateGRanges.Rd man/logisticRegression.Rd man/globalTest.Rd man/writeBED.Rd man/betaResultsNull.Rd man/plotMeth.Rd man/findDMRs.Rd man/readBismark.Rd man/plotBindingSites.Rd man/rawToRel.Rd man/binomLikelihoodSmooth.Rd man/covStatistics.Rd man/covBoxplots.Rd man/DMRs.Rd man/rrbs.Rd man/makeVariogram.Rd man/filterByCov.Rd man/plotSmoothMeth.Rd man/betaRegression.Rd man/predictMeth.Rd man/clusterSites.Rd man/testClusters.Rd man/trimClusters.Rd man/clusterSitesToGR.Rd man/betaResults.Rd man/promoters.Rd man/vario.Rd man/smoothVariogram.Rd man/BSraw-class.Rd man/filterBySharedRegions.Rd man/compareTwoSamples.Rd man/limitCov.Rd man/summarizeRegions.Rd
inst/doc/BiSeq.Rnw
inst/doc/BiSeq.R inst/doc/BiSeq.pdf
inst/extdata/CpG_context_test_sample.cov
BiSeq documentation built on Nov. 8, 2020, 8:05 p.m.