The created bed files contains an entry for each CpG site. Strand information, relative methylation and absolute number of reads covering the CpG sites are stored. The relative methylation is indicated by colors: green via black to red for unmethylated to methylated.
Track names (sample names) written to the bed file's header.
Character vector with names of the bed file.
The written bed file contains the following extra information:
score: the relative methylation of the CpG site
name: the coverage of the CpG site
itemRgb: a color value visualizing the methylation score
A separate bed file is created for each sample in the
given object. The lengths of the arguments
file should equal the number of
Nothing. Bed files are written.
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