API for BioQC
Detect tissue heterogeneity in expression profiles with gene sets

Global functions
BaseIndexList-class Man page
GmtList Man page Source code
GmtList-class Man page
IndexList Man page Man page
IndexList,list-method Man page
IndexList,logical-method Man page
IndexList,numeric-method Man page
IndexList-class Man page
IndexListFromList Source code
SignedGenesets Man page Source code
SignedGenesets-class Man page
SignedIndexList Man page Man page
SignedIndexList,list-method Man page
SignedIndexList-class Man page
SignedIndexListFromList Source code
absLog10p Man page Source code
as.gmtlist Man page Source code
atomDiversity Source code
atomEntropy Source code
entropy Man page Source code
entropyDiversity Man page Source code
entropySpecificity Man page Source code
filterPmat Man page Source code
gini Man page Source code
gmtlist2signedGenesets Man page Source code
isValidBaseIndexList Source code
isValidGmtList Source code
isValidIndexList Source code
isValidSignedGenesets Source code
isValidSignedIndexList Source code
matchGeneExclNA Source code
matchGenes Man page Man page
matchGenes,GmtList,character-method Man page
matchGenes,GmtList,eSet-method Man page
matchGenes,GmtList,matrix-method Man page
matchGenes,SignedGenesets,character-method Man page
matchGenes,SignedGenesets,eSet-method Man page
matchGenes,SignedGenesets,matrix-method Man page
matchGenes,character,character-method Man page
matchGenes,character,eSet-method Man page
matchGenes,character,matrix-method Man page
matchGenes.default Source code
matchGenes.signedDefault Source code
modOffset Source code
offset,BaseIndexList-method Man page
offset-set Man page
offset<- Man page
offset<-,IndexList,numeric-method Man page
offset<-,SignedIndexList,numeric-method Man page
parseIndex Source code
rankSumTestWithCorrelation Source code
readGmt Man page Source code
readSignedGmt Man page Source code
sampleSpecialization Man page Source code
showGeneSet Source code
showIndices Source code
showSignedGeneset Source code
showSignedIndices Source code
simplifyMatrix Man page Source code
type2int Source code
valTypes Man page Source code
wmwTest Man page Man page
wmwTest,ANY,list-method Man page
wmwTest,ANY,logical-method Man page
wmwTest,ANY,numeric-method Man page
wmwTest,eSet,GmtList-method Man page
wmwTest,eSet,SignedIndexList-method Man page
wmwTest,eSet,list-method Man page
wmwTest,eSet,logical-method Man page
wmwTest,eSet,numeric-method Man page
wmwTest,matrix,GmtList-method Man page
wmwTest,matrix,IndexList-method Man page
wmwTest,matrix,SignedIndexList-method Man page
wmwTest,numeric,IndexList-method Man page
wmwTest,numeric,SignedIndexList-method Man page
wmwTest.default Source code
wmwTestInR Man page Source code
wmwTestSignedGenesets.default Source code
BioQC documentation built on Nov. 17, 2017, 10:11 a.m.