API for BioQC
Detect tissue heterogeneity in expression profiles with gene sets

Global functions
BaseIndexList-class Man page
DGEListSymbols Source code
GmtList Man page Source code
GmtList-class Man page
IndexList Man page
IndexList,list-method Man page
IndexList,logical-method Man page
IndexList,numeric-method Man page
IndexList-class Man page
IndexListFromList Source code
SignedGenesets Man page Source code
SignedGenesets-class Man page
SignedIndexList Man page
SignedIndexList,list-method Man page
SignedIndexList-class Man page
SignedIndexListFromList Source code
[.GmtList Man page
[[.GmtList Man page
`[.GmtList` Source code
`[[.GmtList` Source code
`gsNamespace<-` Source code
absLog10p Man page Source code
appendGmtList Man page Source code
appendOneGmtList Source code
as.GmtList Man page Source code
atomDiversity Source code
atomEntropy Source code
eSetSymbols Source code
entropy Man page Source code
entropyDiversity Man page Source code
entropySpecificity Man page Source code
filterBySize Man page Source code
filterPmat Man page Source code
getSymbols Source code
gini Man page Source code
gmtlist2signedGenesets Man page Source code
gsDesc Man page Source code
gsGeneCount Man page Source code
gsGenes Man page Source code
gsName Man page Source code
gsNamespace Man page Source code
gsNamespace<- Man page
gsSize Man page Source code
hasNamespace Man page Source code
isValidBaseIndexList Source code
isValidGmtList Source code
isValidIndexList Source code
isValidSignedGenesets Source code
isValidSignedIndexList Source code
matchGeneExclNA Source code
matchGenes Man page
matchGenes,GmtList,DGEList-method Man page
matchGenes,GmtList,character-method Man page
matchGenes,GmtList,eSet-method Man page
matchGenes,GmtList,matrix-method Man page
matchGenes,SignedGenesets,DGEList-method Man page
matchGenes,SignedGenesets,character-method Man page
matchGenes,SignedGenesets,eSet-method Man page
matchGenes,SignedGenesets,matrix-method Man page
matchGenes,character,DGEList-method Man page
matchGenes,character,character-method Man page
matchGenes,character,eSet-method Man page
matchGenes,character,matrix-method Man page
matchGenes.default Source code
matchGenes.signedDefault Source code
modOffset Source code
offset Man page
offset,BaseIndexList-method Man page
offset-set Man page
offset<- Man page
offset<-,IndexList,numeric-method Man page
offset<-,SignedIndexList,numeric-method Man page
parseIndex Source code
readGmt Man page Source code
readSignedGmt Man page Source code
readSingleGmt Source code
sampleSpecialization Man page Source code
setDescAsNamespace Man page Source code
setNamespace Man page Source code
show,GmtList-method Man page
show,IndexList-method Man page
show,SignedGenesets-method Man page
show,SignedIndexList-method Man page
showGeneSet Source code
showIndices Source code
showSignedGeneset Source code
showSignedIndices Source code
simplifyMatrix Man page Source code
type2int Source code
uniqGenesetsByNamespace Man page Source code
valTypes Man page Source code
wmwTest Man page
wmwTest,ANY,list-method Man page
wmwTest,ANY,logical-method Man page
wmwTest,ANY,numeric-method Man page
wmwTest,eSet,GmtList-method Man page
wmwTest,eSet,SignedIndexList-method Man page
wmwTest,eSet,list-method Man page
wmwTest,eSet,logical-method Man page
wmwTest,eSet,numeric-method Man page
wmwTest,matrix,GmtList-method Man page
wmwTest,matrix,IndexList-method Man page
wmwTest,matrix,SignedIndexList-method Man page
wmwTest,numeric,IndexList-method Man page
wmwTest,numeric,SignedIndexList-method Man page
wmwTest.default Source code
wmwTestInR Man page Source code
wmwTestSignedGenesets.default Source code
BioQC documentation built on Oct. 31, 2019, 2:23 a.m.