API for BioQC
Detect tissue heterogeneity in expression profiles with gene sets

Global functions
BaseIndexList-class	Man page
DGEListSymbols	Source code
GmtList	Man page Source code
GmtList-class	Man page
IndexList	Man page
IndexList,list-method	Man page
IndexList,logical-method	Man page
IndexList,numeric-method	Man page
IndexList-class	Man page
IndexListFromList	Source code
SignedGenesets	Man page Source code
SignedGenesets-class	Man page
SignedIndexList	Man page
SignedIndexList,list-method	Man page
SignedIndexList-class	Man page
SignedIndexListFromList	Source code
[.GmtList	Man page
[[.GmtList	Man page
`[.GmtList`	Source code
`[[.GmtList`	Source code
`gsNamespace<-`	Source code
absLog10p	Man page Source code
appendGmtList	Man page Source code
appendOneGmtList	Source code
as.GmtList	Man page Source code
atomDiversity	Source code
atomEntropy	Source code
eSetSymbols	Source code
entropy	Man page Source code
entropyDiversity	Man page Source code
entropySpecificity	Man page Source code
filterBySize	Man page Source code
filterPmat	Man page Source code
getSymbols	Source code
gini	Man page Source code
gmtlist2signedGenesets	Man page Source code
gsDesc	Man page Source code
gsGeneCount	Man page Source code
gsGenes	Man page Source code
gsName	Man page Source code
gsNamespace	Man page Source code
gsNamespace<-	Man page
gsSize	Man page Source code
hasNamespace	Man page Source code
isValidBaseIndexList	Man page Source code
isValidGmtList	Man page Source code
isValidIndexList	Man page Source code
isValidSignedGenesets	Man page Source code
isValidSignedIndexList	Man page Source code
matchGeneExclNA	Source code
matchGenes	Man page
matchGenes,GmtList,DGEList-method	Man page
matchGenes,GmtList,character-method	Man page
matchGenes,GmtList,eSet-method	Man page
matchGenes,GmtList,matrix-method	Man page
matchGenes,SignedGenesets,DGEList-method	Man page
matchGenes,SignedGenesets,character-method	Man page
matchGenes,SignedGenesets,eSet-method	Man page
matchGenes,SignedGenesets,matrix-method	Man page
matchGenes,character,DGEList-method	Man page
matchGenes,character,character-method	Man page
matchGenes,character,eSet-method	Man page
matchGenes,character,matrix-method	Man page
matchGenes.default	Source code
matchGenes.signedDefault	Source code
modOffset	Source code
offset	Man page
offset,BaseIndexList-method	Man page
offset-set	Man page
offset<-	Man page
offset<-,IndexList,numeric-method	Man page
offset<-,SignedIndexList,numeric-method	Man page
parseIndex	Source code
readGmt	Man page Source code
readSignedGmt	Man page Source code
readSingleGmt	Source code
sampleSpecialization	Man page Source code
setDescAsNamespace	Man page Source code
setNamespace	Man page Source code
show,GmtList-method	Man page
show,IndexList-method	Man page
show,SignedGenesets-method	Man page
show,SignedIndexList-method	Man page
showGeneSet	Source code
showIndices	Source code
showSignedGeneset	Source code
showSignedIndices	Source code
simplifyMatrix	Man page Source code
type2int	Source code
uniqGenesetsByNamespace	Man page Source code
valTypes	Man page Source code
wmwTest	Man page
wmwTest,ANY,list-method	Man page
wmwTest,ANY,logical-method	Man page
wmwTest,ANY,numeric-method	Man page
wmwTest,eSet,GmtList-method	Man page
wmwTest,eSet,SignedGenesets-method	Man page
wmwTest,eSet,SignedIndexList-method	Man page
wmwTest,eSet,list-method	Man page
wmwTest,eSet,logical-method	Man page
wmwTest,eSet,numeric-method	Man page
wmwTest,matrix,GmtList-method	Man page
wmwTest,matrix,IndexList-method	Man page
wmwTest,matrix,SignedGenesets-method	Man page
wmwTest,matrix,SignedIndexList-method	Man page
wmwTest,numeric,IndexList-method	Man page
wmwTest,numeric,SignedIndexList-method	Man page
wmwTest.default	Source code
wmwTestInR	Man page Source code
wmwTestSignedGenesets.default	Source code