readGmt: Read in gene sets from a GMT file
In BioQC: Detect tissue heterogeneity in expression profiles with gene sets
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Read in gene sets from a GMT file
Usage
1
readGmt(filename)
Arguments
filename
GMT file name
Value
A gene set list, wrapped in a S3-class gmtlist. Each list item is
a list with three items: gene set name (name), gene set
description (desc), and gene list (a character vector,
genes).
Author(s)
Jitao David Zhang <jitao_david.zhang@roche.com>
Examples
1
2
gmt_file <- system.file("extdata/exp.tissuemark.affy.roche.symbols.gmt", package="BioQC")
gmt_list <- readGmt(gmt_file)
BioQC documentation built on May 31, 2017, 2:09 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Read in gene sets from a GMT file
Usage
1 | readGmt(filename)
|
Arguments
filename |
GMT file name |
Value
A gene set list, wrapped in a S3-class gmtlist. Each list item is
a list with three items: gene set name (name), gene set
description (desc), and gene list (a character vector,
genes).
Author(s)
Jitao David Zhang <jitao_david.zhang@roche.com>
Examples
1 2 | gmt_file <- system.file("extdata/exp.tissuemark.affy.roche.symbols.gmt", package="BioQC")
gmt_list <- readGmt(gmt_file)
|
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