readGmt: Read in gene sets from a GMT file

Description Usage Arguments Value Author(s) Examples

View source: R/readGmt.R

Description

Read in gene sets from a GMT file

Usage

1
readGmt(filename)

Arguments

filename

GMT file name

Value

A gene set list, wrapped in a S3-class gmtlist. Each list item is a list with three items: gene set name (name), gene set description (desc), and gene list (a character vector, genes).

Author(s)

Jitao David Zhang <[email protected]>

Examples

1
2
gmt_file <- system.file("extdata/exp.tissuemark.affy.roche.symbols.gmt", package="BioQC")
gmt_list <- readGmt(gmt_file)

BioQC documentation built on May 31, 2017, 2:09 p.m.