Read in gene sets from a GMT file

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Description

Read in gene sets from a GMT file

Usage

1
readGmt(filename)

Arguments

filename

GMT file name

Value

A gene set list, wrapped in a S3-class gmtlist. Each list item is a list with three items: gene set name (name), gene set description (desc), and gene list (a character vector, genes).

Author(s)

Jitao David Zhang <jitao_david.zhang@roche.com>

Examples

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gmt_file <- system.file("extdata/exp.tissuemark.affy.roche.symbols.gmt", package="BioQC")
gmt_list <- readGmt(gmt_file)