SignedGenesets: Convert a list to a SignedGenesets object

In BioQC: Detect tissue heterogeneity in expression profiles with gene sets

Description

Convert a list to a SignedGenesets object

Usage

SignedGenesets(list)

Arguments

list	A list of genesets; each geneset is a list of at least three fields: 'name', 'pos', and 'neg'. 'name' contains one non-null character string, and both 'pos' and 'neg' can be either NULL or a character vector.

See Also

GmtList

Examples

testList <- list(list(name="GS_A", pos=NULL, neg=LETTERS[1:3]),
                 list(name="GS_B", pos=LETTERS[1:5], neg=LETTERS[7:9]),
                 list(name="GS_C", pos=LETTERS[1:5], neg=NULL),
                 list(name="GS_D", pos=NULL, neg=NULL))
testSigndGS <- SignedGenesets(testList)

BioQC documentation built on Nov. 8, 2020, 7:16 p.m.