Files in BioQC

Detect tissue heterogeneity in expression profiles with gene sets

README.md R/GmtList-funcs.R R/readSignedGmt.R R/entropy.R R/appendGmtList.R R/utils.R R/AllMethods.R R/as.GmtList.R R/matchGenes.R R/gini.R R/uniqGenesetsByNamespace.R R/AllClasses.R R/readGmt.R R/wmwTest.R vignettes/bioqc-efficiency.Rmd vignettes/bioqc-signedGenesets.Rmd vignettes/bioqc.Rmd man/show-SignedGenesets-method.Rd man/matchGenes.Rd man/gsNamespace.Rd man/setNamespace.Rd man/entropySpecificity.Rd man/BaseIndexList-class.Rd man/offset.Rd man/entropyDiversity.Rd man/entropy.Rd man/readGmt.Rd man/hasNamespace.Rd man/as.GmtList.Rd man/gmtlist2signedGenesets.Rd man/filterPmat.Rd man/wmwTestInR.Rd man/wmwTest.Rd man/isValidIndexList.Rd man/gsGenes.Rd man/setGsNamespace.Rd man/isValidSignedGenesets.Rd man/absLog10p.Rd man/isValidGmtList.Rd man/sub-sub-.GmtList.Rd man/GmtList-class.Rd man/show-IndexList-method.Rd man/filterBySize.Rd man/setDescAsNamespace.Rd man/SignedGenesets.Rd man/readSignedGmt.Rd man/offset-set.Rd man/isValidBaseIndexList.Rd man/appendGmtList.Rd man/IndexList-class.Rd man/show-SignedIndexList-method.Rd man/SignedGenesets-class.Rd man/valTypes.Rd man/gini.Rd man/uniqGenesetsByNamespace.Rd man/sampleSpecialization.Rd man/gsDesc.Rd man/isValidSignedIndexList.Rd man/IndexList.Rd man/simplifyMatrix.Rd man/SignedIndexList-class.Rd man/GmtList.Rd man/gsName.Rd man/sub-.GmtList.Rd man/SignedIndexList.Rd man/gsGeneCount.Rd man/show-GmtList-method.Rd tests/testthat.R tests/testthat/test-indexlist.R tests/testthat/test-wmwTest.R tests/testthat/test-gini.R tests/testthat/test-readgmt.R tests/testthat/test-out-of-range.R tests/testthat/test-matchGene.R inst/doc/bioqc-efficiency.Rmd inst/doc/bioqc-signedGenesets.Rmd inst/doc/bioqc.Rmd inst/doc/bioqc-signedGenesets.R inst/doc/bioqc.R inst/doc/bioqc-efficiency.R