Global functions | |
---|---|
$,AnnotatedDataFrame-method | Man page |
$,eSet-method | Man page |
$<-,AnnotatedDataFrame-method | Man page |
$<-,Versions-method | Man page |
$<-,eSet-method | Man page |
.DollarNames.eSet | Source code |
.as.numeric_version | Source code |
.asValidVersions | Source code |
.assayDataDimnames | Source code |
.assayDataGets_NChannelSet | Source code |
.buildBiobaseOpts | Source code |
.canVersionCompare | Source code |
.esApply | Source code |
.harmonizeDimnames | Source code |
.initContents | Source code |
.invalid_NChannelAssayNames | Source code |
.isValidVersion | Source code |
.new_env_size | Source code |
.onAttach | Source code |
.onLoad | Source code |
.onUnload | Source code |
.showAnnotatedDataFrame | Source code |
.validate_assayDataElementReplace | Source code |
.wrapcat | Source code |
Aggregate | Man page Source code |
AnnotatedDataFrame | Man page |
AnnotatedDataFrame,data.frame,data.frame-method | Man page |
AnnotatedDataFrame,data.frame,missing-method | Man page |
AnnotatedDataFrame,missing,missing-method | Man page |
AnnotatedDataFrame-class | Man page |
AssayData | Man page |
AssayData-class | Man page |
Biobase | Man page |
Biobase-package | Man page |
Compare,Versions,Versions-method | Man page |
Compare,Versions,character-method | Man page |
Compare,character,Versions-method | Man page |
ExpressionSet | Man page |
ExpressionSet,environment-method | Man page |
ExpressionSet,matrix-method | Man page |
ExpressionSet,missing-method | Man page |
ExpressionSet-class | Man page |
MIAME | Man page Source code |
MIAME-class | Man page |
MIAxE | Man page |
MIAxE-class | Man page |
MultiSet | Man page |
MultiSet-class | Man page |
NChannelSet | Man page |
NChannelSet-class | Man page |
SW | Man page |
ScalarCharacter-class | Man page |
ScalarInteger-class | Man page |
ScalarLogical-class | Man page |
ScalarNumeric-class | Man page |
ScalarObject-class | Man page |
SnpSet | Man page |
SnpSet-class | Man page |
Versioned | Man page |
Versioned-class | Man page |
VersionedBiobase | Man page |
VersionedBiobase-class | Man page |
Versions | Man page |
Versions-class | Man page |
VersionsNull | Man page |
VersionsNull-class | Man page |
[,AnnotatedDataFrame-method | Man page |
[,Versions-method | Man page |
[,container-method | Man page |
[,eSet-method | Man page |
[<-,Versions-method | Man page |
[[,AnnotatedDataFrame-method | Man page |
[[,container-method | Man page |
[[,eSet-method | Man page |
[[<-,AnnotatedDataFrame-method | Man page |
[[<-,Versions-method | Man page |
[[<-,container-method | Man page |
[[<-,eSet-method | Man page |
`assayDataElement<-` | Source code |
aaMap | Man page |
abstract | Man page |
abstract,MIAME-method | Man page |
abstract,eSet-method | Man page |
addVigs2WinMenu | Man page Source code |
aggenv | Man page |
aggenv,aggregator-method | Man page |
aggfun | Man page |
aggfun,aggregator-method | Man page |
aggregator | Man page |
aggregator-class | Man page |
annotatedDataFrameFrom | Man page |
annotatedDataFrameFrom,AssayData-method | Man page |
annotatedDataFrameFrom,NULL-method | Man page |
annotatedDataFrameFrom,matrix-method | Man page |
annotatedDataFrameFromAssayData | Source code |
annotatedDataFrameFromMatrix | Source code |
annotatedDataFrameFromNull | Source code |
annotatedDataset | Man page |
annotatedDataset-class | Man page |
annotation,eSet-method | Man page |
annotation<-,eSet,character-method | Man page |
anyMissing | Man page Source code |
as.data.frame.ExpressionSet | Man page Source code |
assayData | Man page |
assayData,AssayData-method | Man page |
assayData,eSet-method | Man page |
assayData<- | Man page |
assayData<-,NChannelSet,environment-method | Man page |
assayData<-,NChannelSet,list-method | Man page |
assayData<-,eSet,AssayData-method | Man page |
assayDataDim | Source code |
assayDataDims | Source code |
assayDataElement | Man page Source code |
assayDataElement<- | Man page |
assayDataElementNames | Man page Source code |
assayDataElementReplace | Man page Source code |
assayDataEnvLock | Source code |
assayDataNew | Man page Source code |
assayDataStorageMode | Source code |
assayDataStorageModeReplace | Source code |
assayDataSubsetElements | Source code |
assayDataValidMembers | Man page Source code |
biocReposList | Man page |
cache | Man page Source code |
channel | Man page |
channel,NChannelSet,character-method | Man page |
channelNames | Man page |
channelNames,NChannelSet-method | Man page |
channelNames<- | Man page |
channelNames<-,NChannelSet,character-method | Man page |
channelNames<-,NChannelSet,list-method | Man page |
characterORMIAME-class | Man page |
checkClass | Source code |
class.NChannelSet | Man page |
class:AnnotatedDataFrame | Man page |
class:ExpressionSet | Man page |
class:MIAME | Man page |
class:MIAxE | Man page |
class:MultiSet | Man page |
class:SnpSet | Man page |
class:aggregator | Man page |
class:annotatedDataset | Man page |
class:characterORMIAME | Man page |
class:container | Man page |
class:eSet | Man page |
class:exprList | Man page |
class:exprMatrix | Man page |
class:exprSet | Man page |
class:phenoData | Man page |
classVersion | Man page |
classVersion,ANY-method | Man page |
classVersion,Versioned-method | Man page |
classVersion,character-method | Man page |
classVersion<- | Man page |
classVersion<-,Versioned,Versions-method | Man page |
coerce,AnnotatedDataFrame,data.frame-method | Man page |
coerce,ExpressionSet,data.frame-method | Man page |
coerce,Versions,character-method | Man page |
coerce,data.frame,AnnotatedDataFrame-method | Man page |
coerce,eSet,ExpressionSet-method | Man page |
coerce,eSet,MultiSet-method | Man page |
coerce,exprSet,ExpressionSet-method | Man page |
coerce,phenoData,AnnotatedDataFrame-method | Man page |
combine,AnnotatedDataFrame,AnnotatedDataFrame-method | Man page |
combine,AssayData,AssayData-method | Man page |
combine,MIAME,MIAME-method | Man page |
combine,eSet,ANY-method | Man page |
combine,eSet,eSet-method | Man page |
container | Man page |
container-class | Man page |
content | Man page |
content,container-method | Man page |
contents | Man page |
contents,environment-method | Man page |
copyEnv | Man page Source code |
copySubstitute | Man page Source code |
createPackage | Man page Source code |
data.frameOrNULL-class | Man page |
data:aaMap | Man page |
data:geneCov | Man page |
data:geneCovariate | Man page |
data:geneData | Man page |
data:reporter | Man page |
data:sample.ExpressionSet | Man page |
data:sample.MultiSet | Man page |
data:sample.eSet | Man page |
data:sample.exprSet | Man page |
data:sample.exprSet.1 | Man page |
data:seD | Man page |
description | Man page |
description,eSet-method | Man page |
description<- | Man page |
description<-,eSet,MIAME-method | Man page |
df2pD | Man page |
dim,AnnotatedDataFrame-method | Man page |
dim,eSet-method | Man page |
dimLabels | Man page |
dimLabels,AnnotatedDataFrame-method | Man page |
dimLabels<- | Man page |
dimLabels<-,AnnotatedDataFrame,character-method | Man page |
dimnames | Man page |
dimnames,AnnotatedDataFrame-method | Man page |
dimnames,eSet-method | Man page |
dimnames<- | Man page |
dimnames<-,AnnotatedDataFrame-method | Man page |
dimnames<-,eSet-method | Man page |
dims | Man page |
dims,eSet-method | Man page |
dumpPackTxt | Man page |
eList | Man page |
eList,eSet-method | Man page |
eList<- | Man page |
eList<-,eSet,AssayData-method | Man page |
eSet | Man page |
eSet-class | Man page |
esApply | Man page |
esApply,ExpressionSet-method | Man page |
experimentData | Man page |
experimentData,eSet-method | Man page |
experimentData<- | Man page |
experimentData<-,eSet,MIAME-method | Man page |
expinfo | Man page |
expinfo,MIAME-method | Man page |
exprList | Man page |
exprList-class | Man page |
exprMatrix | Man page |
exprMatrix-class | Man page |
exprSet | Man page |
exprSet-class | Man page |
exprs | Man page |
exprs,ExpressionSet-method | Man page |
exprs,SnpSet-method | Man page |
exprs,eSet-method | Man page |
exprs<- | Man page |
exprs<-,ExpressionSet,matrix-method | Man page |
exprs<-,SnpSet,matrix-method | Man page |
exprs<-,eSet,AssayData-method | Man page |
fData | Man page |
fData,eSet-method | Man page |
fData<- | Man page |
fData<-,eSet,data.frame-method | Man page |
featureData | Man page |
featureData,eSet-method | Man page |
featureData<- | Man page |
featureData<-,eSet,AnnotatedDataFrame-method | Man page |
featureNames | Man page |
featureNames,AnnotatedDataFrame-method | Man page |
featureNames,AssayData-method | Man page |
featureNames,eSet-method | Man page |
featureNames<- | Man page |
featureNames<-,AnnotatedDataFrame-method | Man page |
featureNames<-,AssayData-method | Man page |
featureNames<-,eSet-method | Man page |
fvarLabels | Man page |
fvarLabels,eSet-method | Man page |
fvarLabels<- | Man page |
fvarLabels<-,eSet-method | Man page |
fvarMetadata | Man page |
fvarMetadata,eSet-method | Man page |
fvarMetadata<- | Man page |
fvarMetadata<-,eSet,data.frame-method | Man page |
geneCov | Man page |
geneCovariate | Man page |
geneData | Man page |
geneNames | Man page |
geneNames,ExpressionSet-method | Man page |
geneNames<- | Man page |
geneNames<-,ExpressionSet,character-method | Man page |
getExpData | Man page |
getExpData,eSet,character-method | Man page |
getPkgVigs | Man page Source code |
head.AnnotatedDataFrame | Man page Source code |
hybridizations | Man page |
hybridizations,MIAME-method | Man page |
initfun | Man page |
initfun,aggregator-method | Man page |
initialize,AnnotatedDataFrame-method | Man page |
initialize,ExpressionSet-method | Man page |
initialize,MultiSet-method | Man page |
initialize,NChannelSet-method | Man page |
initialize,SnpSet-method | Man page |
initialize,Versioned-method | Man page |
initialize,Versions-method | Man page |
initialize,VersionsNull-method | Man page |
initialize,aggregator-method | Man page |
initialize,annotatedDataset-method | Man page |
initialize,eSet-method | Man page |
initialize,exprSet-method | Man page |
initialize,phenoData-method | Man page |
isCurrent | Man page |
isCurrent,ANY,ANY-method | Man page |
isCurrent,MIAME,missing-method | Man page |
isCurrent,Versioned,character-method | Man page |
isCurrent,Versioned,missing-method | Man page |
isUnique | Man page Source code |
isValidVersion | Source code |
isVersioned | Man page |
isVersioned,ANY-method | Man page |
isVersioned,Versioned-method | Man page |
isVersioned,character-method | Man page |
l2e | Man page Source code |
lcPrefix | Man page Source code |
lcPrefixC | Man page Source code |
lcSuffix | Man page Source code |
length,container-method | Man page |
listLen | Man page Source code |
listOrEnv | Man page |
listOrEnv-class | Man page |
locked | Man page |
locked,container-method | Man page |
makeDataPackage | Man page |
makeDataPackage,ANY-method | Man page |
makeDataPackage,ExpressionSet-method | Man page |
matchpt | Man page Source code |
mkScalar | Man page Source code |
multiassign | Man page |
ncol,AnnotatedDataFrame-method | Man page |
ncol,eSet-method | Man page |
normControls | Man page |
normControls,MIAME-method | Man page |
note | Man page Source code |
notes | Man page |
notes,MIAME-method | Man page |
notes,eSet-method | Man page |
notes<- | Man page |
notes<-,MIAME,character-method | Man page |
notes<-,MIAME,list-method | Man page |
notes<-,eSet,ANY-method | Man page |
openPDF | Man page Source code |
openVignette | Man page Source code |
otherInfo | Man page |
otherInfo,MIAME-method | Man page |
pD2Rd | Source code |
pData | Man page |
pData,AnnotatedDataFrame-method | Man page |
pData,eSet-method | Man page |
pData<- | Man page |
pData<-,AnnotatedDataFrame,data.frame-method | Man page |
pData<-,eSet,data.frame-method | Man page |
package.version | Man page Source code |
phenoData | Man page |
phenoData,eSet-method | Man page |
phenoData-class | Man page |
phenoData<- | Man page |
phenoData<-,eSet,AnnotatedDataFrame-method | Man page |
preproc | Man page |
preproc,MIAME-method | Man page |
preproc,eSet-method | Man page |
preproc<- | Man page |
preproc<-,MIAME-method | Man page |
preproc<-,eSet-method | Man page |
protocolData | Man page |
protocolData,eSet-method | Man page |
protocolData<- | Man page |
protocolData<-,eSet,AnnotatedDataFrame-method | Man page |
protocolData<-,eSet,character-method | Man page |
pubMedIds | Man page |
pubMedIds,MIAME-method | Man page |
pubMedIds,eSet-method | Man page |
pubMedIds<- | Man page |
pubMedIds<-,MIAME,ANY-method | Man page |
pubMedIds<-,eSet,character-method | Man page |
read.AnnotatedDataFrame | Man page Source code |
read.MIAME | Man page Source code |
read.exprSet | Man page |
read.pD | Man page |
read.phenoData | Man page |
readExpressionSet | Man page Source code |
reporter | Man page |
reporterNames | Man page |
reporterNames,eSet-method | Man page |
reporterNames<- | Man page |
reporterNames<-,eSet,character-method | Man page |
reverseSplit | Man page Source code |
rowMax | Man page Source code |
rowMedians | Man page |
rowMedians,ExpressionSet-method | Man page |
rowMedians,matrix-method | Man page |
rowMin | Man page Source code |
rowQ | Man page |
rowQ,ExpressionSet,numeric-method | Man page |
rowQ,matrix,numeric-method | Man page |
sample.ExpressionSet | Man page |
sample.MultiSet | Man page |
sample.eSet | Man page |
sample.exprSet | Man page |
sample.exprSet.1 | Man page |
sampleNames | Man page |
sampleNames,AnnotatedDataFrame-method | Man page |
sampleNames,AssayData-method | Man page |
sampleNames,NChannelSet-method | Man page |
sampleNames,eSet-method | Man page |
sampleNames<- | Man page |
sampleNames<-,AnnotatedDataFrame,ANY-method | Man page |
sampleNames<-,AssayData,ANY-method | Man page |
sampleNames<-,AssayData,list-method | Man page |
sampleNames<-,NChannelSet,list-method | Man page |
sampleNames<-,eSet,ANY-method | Man page |
samples | Man page |
samples,MIAME-method | Man page |
se.exprs | Man page |
se.exprs<- | Man page |
seD | Man page |
selectChannels | Man page |
selectChannels,NChannelSet,character-method | Man page |
selectSome | Man page Source code |
show,AnnotatedDataFrame-method | Man page |
show,MIAME-method | Man page |
show,MIAxE-method | Man page |
show,ScalarCharacter-method | Man page |
show,ScalarObject-method | Man page |
show,Versioned-method | Man page |
show,Versions-method | Man page |
show,VersionsNull-method | Man page |
show,container-method | Man page |
show,eSet-method | Man page |
snpCall | Man page |
snpCall,SnpSet-method | Man page |
snpCall<- | Man page |
snpCall<-,SnpSet,matrix-method | Man page |
snpCallProbability | Man page |
snpCallProbability,SnpSet-method | Man page |
snpCallProbability<- | Man page |
snpCallProbability<-,SnpSet,matrix-method | Man page |
storageMode | Man page |
storageMode,AssayData-method | Man page |
storageMode,eSet-method | Man page Man page |
storageMode<- | Man page |
storageMode<-,AssayData,character-method | Man page |
storageMode<-,eSet,character-method | Man page Man page |
strbreak | Man page Source code |
subListExtract | Man page Source code |
tail.AnnotatedDataFrame | Man page Source code |
testBioCConnection | Man page Source code |
unsafeSetSlot | Source code |
updateESetTo | Source code |
updateObject,AnnotatedDataFrame-method | Man page |
updateObject,ExpressionSet-method | Man page |
updateObject,MIAME-method | Man page |
updateObject,Versions-method | Man page |
updateObject,eSet-method | Man page |
updateObjectTo | Man page |
updateObjectTo,ANY,ANY-method | Man page |
updateObjectTo,eSet,eSet-method | Man page |
updateOldESet | Man page Source code |
updateOldMiame | Man page |
userQuery | Man page Source code |
validAnnotatedDataFrame | Source code |
validMsg | Man page Source code |
varLabels | Man page |
varLabels,AnnotatedDataFrame-method | Man page |
varLabels,eSet-method | Man page |
varLabels<- | Man page |
varLabels<-,AnnotatedDataFrame-method | Man page |
varLabels<-,eSet-method | Man page |
varMetadata | Man page |
varMetadata,AnnotatedDataFrame-method | Man page |
varMetadata,eSet-method | Man page |
varMetadata<- | Man page |
varMetadata<-,AnnotatedDataFrame,data.frame-method | Man page |
varMetadata<-,eSet,data.frame-method | Man page |
write.AnnotatedDataFrame | Man page Source code |
write.exprs | Man page |
write.exprs,ExpressionSet-method | Man page |
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