Files in Biobase
Biobase: Base functions for Bioconductor
README.md
Biobase documentation built on Nov. 8, 2020, 6:52 p.m.
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
src/matchpt.c
src/anyMissing.c
src/templates-types_undef.h
src/rowMedians.c
src/envir.c
src/rowMedians_TYPE-template.h
src/Rinit.c
src/sublist_extract.c
src/templates-types.h
data/aaMap.R
data/sample.MultiSet.rda
data/geneCov.R
data/reporter.rda
data/geneData.R
data/seD.rda
data/geneCovariate.rda
data/sample.ExpressionSet.rda
data/SW.rda
R/methods-ScalarObject.R
R/tools.R
R/methods-container.R
R/methods-MultiSet.R
R/methods-AnnotatedDataFrame.R
R/AllGenerics.R
R/environment.R
R/updateObjectTo.R
R/methods-AssayData.R
R/methods-eSet.R
R/rowOp-methods.R
R/methods-SnpSet.R
R/vignettes.R
R/methods-VersionsNull.R
R/zzz.R
R/methods-ExpressionSet.R
R/VersionsClass.R
R/methods-NChannelSet.R
R/methods-MIAME.R
R/packages.R
R/strings.R
R/VersionedClasses.R
R/methods-VersionedClass.R
R/anyMissing.R
R/DataClasses.R
R/methods-MIAxE.R
R/methods-aggregator.R
vignettes/ExpressionSetIntroduction.Rnw
vignettes/BiobaseDevelopment.Rnw
vignettes/esApply.Rnw
vignettes/legacy/HowTo.Rnw
vignettes/legacy/Qviews.Rnw
vignettes/legacy/Biobase.Rnw
vignettes/legacy/Bioconductor.Rnw
man/description.Rd
man/anyMissing.Rd
man/selectSome.Rd
man/rowQ.Rd
man/contents.Rd
man/featureData.Rd
man/ScalarObject-class.Rd
man/strbreak.Rd
man/isUnique.Rd
man/snpCall.Rd
man/testBioCConnection.Rd
man/annotatedDataFrameFrom-methods.Rd
man/note.Rd
man/class.MultiSet.Rd
man/class.SnpSet.Rd
man/defunct.Rd
man/reverseSplit.Rd
man/updateOldESet.Rd
man/dumpPackTxt.Rd
man/protocolData.Rd
man/selectChannels.Rd
man/lcSuffix.Rd
man/class.container.Rd
man/esApply.Rd
man/class.VersionedBiobase.Rd
man/userQuery.Rd
man/class.AssayData.Rd
man/isCurrent.Rd
man/storageMode.Rd
man/read.MIAME.Rd
man/Biobase-package.Rd
man/createPackage.Rd
man/class.MIAME.Rd
man/phenoData.Rd
man/class.VersionsNull.Rd
man/featureNames.Rd
man/channelNames.Rd
man/notes.Rd
man/cache.Rd
man/exprs.Rd
man/updateObjectTo.Rd
man/data.sample.MultiSet.Rd
man/data.reporter.Rd
man/matchpt.Rd
man/readExpressionSet.Rd
man/addVig2Menu.Rd
man/isVersioned.Rd
man/class.Versions.Rd
man/validMsg.Rd
man/assayData.Rd
man/openPDF.Rd
man/data.sample.ExpressionSet.Rd
man/package.version.Rd
man/read.AnnotatedDataFrame.Rd
man/rowMedians.Rd
man/subListExtract.Rd
man/class.eSet.Rd
man/multiassign.Rd
man/class.characterORmiame.Rd
man/class.aggregator.Rd
man/class.ExpressionSet.Rd
man/listLen.Rd
man/data.aaMap.Rd
man/class.AnnotatedDataFrame.Rd
man/class.NChannelSet.Rd
man/openVignette.Rd
man/getPkgVigs.Rd
man/internals.Rd
man/copyEnv.Rd
man/class.Versioned.Rd
man/data.geneData.Rd
man/abstract.Rd
man/channel.Rd
man/makeDataPackage.Rd
man/Aggregate.Rd
man/class.MIAxE.Rd
man/copySubstitute.Rd
man/classVersion.Rd
tests/test-all.R
tests/test-rowMedians.R
inst/CITATION
inst/testClass.R
inst/doc/ExpressionSetIntroduction.R
inst/doc/BiobaseDevelopment.R
inst/doc/ExpressionSetIntroduction.Rnw
inst/doc/BiobaseDevelopment.Rnw
inst/doc/BiobaseDevelopment.pdf
inst/doc/esApply.pdf
inst/doc/ExpressionSetIntroduction.pdf
inst/doc/esApply.R
inst/doc/esApply.Rnw
inst/extdata/exprsData.txt
inst/extdata/pData.txt
inst/scripts/esetTesting.R
inst/scripts/query.packages.R
inst/scripts/makeExpressionSetPackage.R
inst/scripts/getBioCPkgNames.R
inst/scripts/getBioC.R
inst/scripts/getBioCHelp
inst/Code/DESCRIPTION
inst/Code/R/get@PKGNAME@.R
inst/Code/man/@PKGNAME@.Rd
inst/Code/man/get@PKGNAME@.Rd
inst/ExpressionSet/DESCRIPTION
inst/ExpressionSet/man/@PKGNAME@.Rd
inst/unitTests/test_copyEnv.R
inst/unitTests/test_ExpressionSet.R
inst/unitTests/test_unsaveSetSlot.R
inst/unitTests/utilities.R
inst/unitTests/test_combine.R
inst/unitTests/test_VersionedClass.R
inst/unitTests/test_cache.R
inst/unitTests/test_UpdateObject.R
inst/unitTests/test_esApply.R
inst/unitTests/test_checkClass.R
inst/unitTests/test_subListExtract.R
inst/unitTests/test_AssayData.R
inst/unitTests/test_EsetSubclasses.R
inst/unitTests/test_NChannelSet.R
inst/unitTests/test_DataClasses.R
inst/unitTests/test_AnnotatedDataFrame.R
inst/unitTests/test_SnpSet.R
inst/unitTests/VersionedClass_data/1.8/ExpressionSet.Rda
inst/unitTests/VersionedClass_data/1.8/MIAME.Rda
inst/unitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda
inst/unitTests/VersionedClass_data/1.8/exprSet.Rda
inst/unitTests/VersionedClass_data/1.8/phenoData.Rda
inst/unitTests/VersionedClass_data/devel/sample.exprSet.1.rda
inst/unitTests/VersionedClass_data/devel/golubMergeSub.rda
inst/unitTests/VersionedClass_data/devel/swrep.rda
inst/unitTests/VersionedClass_data/devel/ScalarCharacter.Rda
inst/unitTests/VersionedClass_data/devel/aggregator.Rda
inst/unitTests/VersionedClass_data/devel/ExpressionSet.Rda
inst/unitTests/VersionedClass_data/devel/SnpSet.Rda
inst/unitTests/VersionedClass_data/devel/MIAME.Rda
inst/unitTests/VersionedClass_data/devel/eset.rda
inst/unitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda
inst/unitTests/VersionedClass_data/devel/sample.eSet.rda
inst/unitTests/VersionedClass_data/devel/exprSet.Rda
inst/unitTests/VersionedClass_data/devel/container.Rda
inst/unitTests/VersionedClass_data/devel/Versioned.Rda
inst/unitTests/VersionedClass_data/devel/ScalarInteger.Rda
inst/unitTests/VersionedClass_data/devel/VersionsNull.Rda
inst/unitTests/VersionedClass_data/devel/ScalarLogical.Rda
inst/unitTests/VersionedClass_data/devel/Versions.Rda
inst/unitTests/VersionedClass_data/devel/bbsym.rda
inst/unitTests/VersionedClass_data/devel/NChannelSet.Rda
inst/unitTests/VersionedClass_data/devel/SWPD.rda
inst/unitTests/VersionedClass_data/devel/VersionedBiobase.Rda
inst/unitTests/VersionedClass_data/devel/sample.exprSet.rda
inst/unitTests/VersionedClass_data/devel/ScalarNumeric.Rda
inst/unitTests/VersionedClass_data/devel/MultiSet.Rda
inst/unitTests/VersionedClass_data/raw/exprs.tab
inst/unitTests/VersionedClass_data/raw/pData.tab
inst/unitTests/VersionedClass_data/raw/varMetadata.tab
inst/unitTests/VersionedClass_data/2.0/ScalarCharacter.Rda
inst/unitTests/VersionedClass_data/2.0/aggregator.Rda
inst/unitTests/VersionedClass_data/2.0/ExpressionSet.Rda
inst/unitTests/VersionedClass_data/2.0/SnpSet.Rda
inst/unitTests/VersionedClass_data/2.0/MIAME.Rda
inst/unitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda
inst/unitTests/VersionedClass_data/2.0/exprSet.Rda
inst/unitTests/VersionedClass_data/2.0/container.Rda
inst/unitTests/VersionedClass_data/2.0/phenoData.Rda
inst/unitTests/VersionedClass_data/2.0/Versioned.Rda
inst/unitTests/VersionedClass_data/2.0/VersionsNull.Rda
inst/unitTests/VersionedClass_data/2.0/Versions.Rda
inst/unitTests/VersionedClass_data/2.0/VersionedBiobase.Rda
inst/unitTests/VersionedClass_data/2.0/MultiSet.Rda
