data.aaMap: Dataset: Names and Characteristics of Amino Acids

In Biobase: Biobase: Base functions for Bioconductor

Description

The aaMap data frame has 20 rows and 6 columns. Includes elementary information about amino acids.

Usage

data(aaMap)

Format

This data frame contains the following columns:

name

amino acid name

let.1

one-letter code

let.3

three-letter code

scProp

side chain property at pH 7 (polar/nonpolar)

hyPhilic

logical: side chain is hydrophilic at pH 7

acidic

logical: side chain is acidic at pH 7

Source

Nei M and Kumar S: Molecular evolution and phylogenetics (Oxford 2000), Table 1.2

Examples

data(aaMap)

Example output

Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

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Biobase documentation built on Nov. 8, 2020, 6:52 p.m.