API for BiocCheck
Bioconductor-specific package checks
| Global functions | |
|---|---|
| .BiocCheckFromCommandLine | Source code |
| .BiocCheckGitCloneFromCommandLine | Source code |
| .checkDescription | Source code |
| .checkEnv | Source code |
| .checkORCID | Source code |
| .colonWalker | Source code |
| .debug | Source code |
| .get_package_dir | Source code |
| .get_package_name | Source code |
| .installScript | Source code |
| .isScriptInstalled | Source code |
| .msg | Source code |
| .onLoad | Source code |
| .printf | Source code |
| .stop | Source code |
| .verbatim | Source code |
| .zeroCounters | Source code |
| BiocCheck | Man page Source code |
| BiocCheckGitClone | Man page Source code |
| Context | Source code |
| check1toN | Source code |
| checkBBScompatibility | Source code |
| checkBadFiles | Source code |
| checkBiocViews | Source code |
| checkClassEqUsage | Source code |
| checkCodingPractice | Source code |
| checkDeprecatedPackages | Source code |
| checkDescription | Source code |
| checkDescriptionNamespaceConsistency | Source code |
| checkExportsAreDocumented | Source code |
| checkForBadDepends | Source code |
| checkForBiocDevelSubscription | Source code |
| checkForCitationFile | Source code |
| checkForDirectSlotAccess | Source code |
| checkForLibraryMe | Source code |
| checkForPromptComments | Source code |
| checkForSupportSiteRegistration | Source code |
| checkForValueSection | Source code |
| checkForVersionNumberMismatch | Source code |
| checkFormatting | Source code |
| checkFunctionLengths | Source code |
| checkImportSuggestions | Source code |
| checkIndivFileSizes | Source code |
| checkInstContents | Source code |
| checkIsPackageAlreadyInRepo | Source code |
| checkIsVignetteBuilt | Source code |
| checkLibraryCalls | Source code |
| checkLogicalUseFiles | Source code |
| checkManDocumentation | Source code |
| checkNEWS | Source code |
| checkNewPackageVersionNumber | Source code |
| checkPackageSize | Source code |
| checkRVersionDependency | Source code |
| checkRemotesUsage | Source code |
| checkSapply | Source code |
| checkSingleColon | Source code |
| checkSkipOnBioc | Source code |
| checkSystemCall | Source code |
| checkUnitTests | Source code |
| checkUsageOfDont | Source code |
| checkVersionNumber | Source code |
| checkVigBiocInst | Source code |
| checkVigBuilder | Source code |
| checkVigChunkEval | Source code |
| checkVigDirExists | Source code |
| checkVigEngine | Source code |
| checkVigEvalAllFalse | Source code |
| checkVigFiles | Source code |
| checkVigMetadata | Source code |
| checkVigSuggests | Source code |
| checkVigTemplate | Source code |
| checkVignetteDir | Source code |
| cleanupDependency | Source code |
| docType | Source code |
| doesFileLoadPackage | Source code |
| doesManPageHaveRunnableExample | Source code |
| findLogicalFile | Source code |
| findLogicalRdir | Source code |
| findSymbolInParsedCode | Source code |
| getAllDependencies | Source code |
| getAllDeprecatedPkgs | Source code |
| getArgParser | Source code |
| getArgParser2 | Source code |
| getBadDeps | Source code |
| getFunctionLengths | Source code |
| getMaintainerEmail | Source code |
| getOptionList | Source code |
| getOptionList2 | Source code |
| getParent | Source code |
| getPkgType | Source code |
| getVigBuilder | Source code |
| getVigEngine | Source code |
| getVigSources | Source code |
| grepPkgDir | Source code |
| handleCheck | Source code |
| handleContext | Source code |
| handleError | Source code |
| handleMessage | Source code |
| handleNote | Source code |
| handleVerbatim | Source code |
| handleWarning | Source code |
| installAndLoad | Source code |
| isInfrastructurePackage | Source code |
| makeTempRFile | Source code |
| mungeName | Source code |
| parseFile | Source code |
| parseFiles | Source code |
| safeFindGlobals | Source code |
| usage | Man page Source code |
| usage2 | Man page Source code |
| vigHelper | Source code |
