BiocParallel
Bioconductor facilities for parallel evaluation

Package index
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Vignettes
Functions
338
Source code
59
Man pages
22
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BiocParallel: Bioconductor facilities for parallel evaluation
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API

API for BiocParallel
Bioconductor facilities for parallel evaluation

Global functions
.BiocParallelParam_prototype Man page
.DONE Source code
.EXEC Source code
.NULLRegistry Source code
.NULLcluster Source code
.VALUE Source code
.batchtoolsClusterAvailable Source code
.bpforkChild Source code
.bpforkConnect Source code
.bpiterate_impl Man page Source code
.bpiterate_serial Source code
.bplapply_impl Man page Source code
.bpregistryargs Source code
.bpresources Source code
.bpsaveregistry Source code
.bpsaveregistry_path Source code
.bpstart_error_handler Source code
.bpstart_impl Man page Source code
.bpstart_set_finalizer Source code
.bpstart_set_logging Source code
.bpstart_set_rng_seed Source code
.bpstop_impl Man page Source code
.bpstop_nodes Source code
.bptemplate Source code
.bpworker_EXEC Source code
.bpworker_impl Man page Source code
.bpwriteLog Source code
.clear_cluster Source code
.close Man page
.close,ANY-method Man page
.close,TransientMulticoreParam-method Man page
.composeBatchtools Source code
.composeTry Source code
.condition_remote Source code
.controlled Source code
.detectCores Source code
.dir_valid_rw Source code
.error Source code
.error_bplist Source code
.error_not_available Source code
.error_remote Source code
.error_unevaluated Source code
.error_worker_comm Source code
.filterDefaultPackages Source code
.foundInPath Source code
.getDotsForMapply Source code
.hostname Source code
.internal_context_set Source code
.internal_context_unset Source code
.log_buffer_append Source code
.log_buffer_get Source code
.log_buffer_init Source code
.log_error Source code
.log_load Source code
.log_warn Source code
.manager_log Source code
.manager_result_save Source code
.mrename Source code
.port Source code
.prettyPath Source code
.progress Source code
.prototype_update Man page Source code
.recv Man page
.recv,ANY-method Man page
.recv,TransientMulticoreParam-method Man page
.recv_all Man page
.recv_all,ANY-method Man page
.recv_all,TransientMulticoreParam-method Man page
.recv_any Man page
.recv_any,ANY-method Man page
.recv_any,TransientMulticoreParam-method Man page
.redo_index Source code
.reducer Source code
.registry_init Source code
.rename Source code
.send Man page
.send,ANY-method Man page
.send,TransientMulticoreParam-method Man page
.send_all Man page
.send_all,ANY-method Man page
.send_to Man page
.send_to,ANY-method Man page
.send_to,TransientMulticoreParam-method Man page
.simplify Source code
.snowCores Source code
.snowCoresMax Source code
.snowHost Source code
.snowPort Source code
.splitX Source code
.stop Source code
BatchJobsParam Man page Source code
BatchJobsParam-class Man page
BatchtoolsParam Man page Source code
BatchtoolsParam-class Man page
BiocParallel Man page
BiocParallel-package Man page
BiocParallelParam Man page
BiocParallelParam-class Man page
DoparParam Man page Source code
DoparParam-class Man page
MulticoreParam Man page Source code
MulticoreParam-class Man page
SerialParam Man page Source code
SerialParam-class Man page
SnowParam Man page Source code
SnowParam-class Man page
TransientMulticoreParam Source code
`print.bplist_error` Source code
batchtoolsCluster Man page Source code
batchtoolsRegistryargs Man page Source code
batchtoolsTemplate Man page Source code
batchtoolsWorkers Man page Source code
bpRNGseed Man page
bpRNGseed,BatchtoolsParam-method Man page
bpRNGseed,BiocParallelParam-method Man page
bpRNGseed<- Man page
bpRNGseed<-,BatchtoolsParam,numeric-method Man page
bpRNGseed<-,BiocParallelParam,NULL-method Man page
bpRNGseed<-,BiocParallelParam,numeric-method Man page
bpaggregate Man page
bpaggregate,ANY,missing-method Man page
bpaggregate,data.frame,BiocParallelParam-method Man page
bpaggregate,formula,BiocParallelParam-method Man page
bpaggregate,matrix,BiocParallelParam-method Man page
bpbackend Man page
bpbackend,BatchJobsParam-method Man page
bpbackend,BatchtoolsParam-method Man page
bpbackend,DoparParam-method Man page
bpbackend,SerialParam-method Man page
bpbackend,SnowParam-method Man page
bpbackend,TransientMulticoreParam-method Man page
bpbackend,missing-method Man page
bpbackend<- Man page
bpbackend<-,BatchJobsParam Man page
bpbackend<-,DoparParam,SOCKcluster-method Man page
bpbackend<-,SnowParam,cluster-method Man page
bpbackend<-,missing,ANY-method Man page
bpexportglobals Man page
bpexportglobals,BiocParallelParam-method Man page
bpexportglobals<- Man page
bpexportglobals<-,BiocParallelParam,logical-method Man page
bpisup Man page
bpisup,ANY-method Man page
bpisup,BatchJobsParam-method Man page
bpisup,BatchtoolsParam-method Man page
bpisup,DoparParam-method Man page
bpisup,MulticoreParam-method Man page
bpisup,SerialParam-method Man page
bpisup,SnowParam-method Man page
bpisup,missing-method Man page
bpiterate Man page
bpiterate,ANY,ANY,BatchJobsParam-method Man page
bpiterate,ANY,ANY,BatchtoolsParam-method Man page
bpiterate,ANY,ANY,BiocParallelParam-method Man page
bpiterate,ANY,ANY,DoparParam-method Man page
bpiterate,ANY,ANY,SerialParam-method Man page
bpiterate,ANY,ANY,SnowParam-method Man page
bpiterate,ANY,ANY,missing-method Man page
bpjobname Man page
bpjobname,BiocParallelParam-method Man page
bpjobname<- Man page
bpjobname<-,BiocParallelParam,character-method Man page
bplapply Man page
bplapply,ANY,BatchJobsParam-method Man page
bplapply,ANY,BatchtoolsParam-method Man page
bplapply,ANY,BiocParallelParam-method Man page
bplapply,ANY,DoparParam-method Man page
bplapply,ANY,SerialParam-method Man page
bplapply,ANY,SnowParam-method Man page
bplapply,ANY,list-method Man page
bplapply,ANY,missing-method Man page
bplog Man page
bplog,BiocParallelParam-method Man page
bplog,SerialParam-method Man page
bplog,SnowParam-method Man page
bplog<- Man page
bplog<-,SerialParam,logical-method Man page
bplog<-,SnowParam,logical-method Man page
bplogdir Man page
bplogdir,BatchtoolsParam-method Man page
bplogdir,BiocParallelParam-method Man page
bplogdir,SerialParam-method Man page
bplogdir<- Man page
bplogdir<-,BatchtoolsParam,character-method Man page
bplogdir<-,BiocParallelParam,character-method Man page
bplogdir<-,SerialParam,character-method Man page
bploop Man page Source code
bploop.iterate Man page Source code
bploop.iterate_batchtools Source code
bploop.lapply Man page Source code
bpmapply Man page
bpmapply,ANY,BiocParallelParam-method Man page
bpmapply,ANY,list-method Man page
bpmapply,ANY,missing-method Man page
bpnworkers Man page Source code
bpok Man page Source code
bpparam Man page Source code
bpprogressbar Man page
bpprogressbar,BiocParallelParam-method Man page
bpprogressbar<- Man page
bpprogressbar<-,BiocParallelParam,logical-method Man page
bpresultdir Man page
bpresultdir,BiocParallelParam-method Man page
bpresultdir<- Man page
bpresultdir<-,BiocParallelParam,character-method Man page
bprunMPIslave Man page Source code
bprunMPIworker Man page Source code
bpschedule Man page
bpschedule,ANY-method Man page
bpschedule,BatchJobsParam-method Man page
bpschedule,BatchtoolsParam-method Man page
bpschedule,MulticoreParam-method Man page
bpschedule,missing-method Man page
bpstart Man page
bpstart,ANY-method Man page
bpstart,BatchJobsParam-method Man page
bpstart,BatchtoolsParam-method Man page
bpstart,BiocParallelParam-method Man page
bpstart,DoparParam-method Man page
bpstart,SerialParam-method Man page
bpstart,SnowParam-method Man page
bpstart,TransientMulticoreParam-method Man page
bpstart,missing-method Man page
bpstop Man page
bpstop,ANY-method Man page
bpstop,BatchJobsParam-method Man page
bpstop,BatchtoolsParam-method Man page
bpstop,BiocParallelParam-method Man page
bpstop,DoparParam-method Man page
bpstop,SerialParam-method Man page
bpstop,SnowParam-method Man page
bpstop,TransientMulticoreParam-method Man page
bpstop,missing-method Man page
bpstopOnError Man page
bpstopOnError,BiocParallelParam-method Man page
bpstopOnError<- Man page
bpstopOnError<-,BiocParallelParam,logical-method Man page
bpstopOnError<-,DoparParam,logical-method Man page
bptasks Man page
bptasks,BiocParallelParam-method Man page
bptasks<- Man page
bptasks<-,BiocParallelParam,numeric-method Man page
bpthreshold Man page
bpthreshold,BiocParallelParam-method Man page
bpthreshold,SnowParam-method Man page
bpthreshold<- Man page
bpthreshold<-,SerialParam,character-method Man page
bpthreshold<-,SnowParam,character-method Man page
bptimeout Man page
bptimeout,BiocParallelParam-method Man page
bptimeout<- Man page
bptimeout<-,BiocParallelParam,numeric-method Man page
bptry Man page Source code
bpvalidate Man page Source code
bpvec Man page
bpvec,ANY,BiocParallelParam-method Man page
bpvec,ANY,list-method Man page
bpvec,ANY,missing-method Man page
bpvectorize Man page
bpvectorize,ANY,ANY-method Man page
bpvectorize,ANY,missing-method Man page
bpworkers Man page
bpworkers,BatchJobsParam-method Man page
bpworkers,BatchtoolsParam-method Man page
bpworkers,BiocParallelParam-method Man page
bpworkers,DoparParam-method Man page
bpworkers,SerialParam-method Man page
bpworkers,SnowParam-method Man page
bpworkers,missing-method Man page
bpworkers<- Man page
bpworkers<-,MulticoreParam,numeric-method Man page
bpworkers<-,SnowParam,character-method Man page
bpworkers<-,SnowParam,numeric-method Man page
coerce,SOCKcluster,DoparParam-method Man page
coerce,SOCKcluster,SnowParam-method Man page
coerce,spawnedMPIcluster,SnowParam-method Man page
ipcid Man page Source code
ipclock Man page Source code
ipclocked Man page Source code
ipcremove Man page Source code
ipcreset Man page Source code
ipctrylock Man page Source code
ipcunlock Man page Source code
ipcvalue Man page Source code
ipcyield Man page Source code
length,TransientMulticoreParam-method Man page
multicoreWorkers Man page Source code
print.NULLRegistry Source code
print.remote_error Man page Source code
register Man page Source code
registered Man page Source code
show,BatchJobsParam-method Man page
show,BatchtoolsParam-method Man page
show,BiocParallel-method Man page
show,DoparParam-method Man page
show,MulticoreParam-method Man page
show,SnowParam-method Man page
snowWorkers Man page Source code
BiocParallel documentation built on Nov. 8, 2020, 5:46 p.m.

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