CNORfuzzy: Addon to CellNOptR: Fuzzy Logic

This package is an extension to CellNOptR. It contains additional functionality needed to simulate and train a prior knowledge network to experimental data using constrained fuzzy logic (cFL, rather than Boolean logic as is the case in CellNOptR). Additionally, this package will contain functions to use for the compilation of multiple optimization results (either Boolean or cFL).

AuthorM. Morris, T. Cokelaer
Date of publicationNone
MaintainerT. Cokelaer <cokelaer@ebi.ac.uk>
LicenseGPL-2
Version1.16.0

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Files in this package

CNORfuzzy/.Rinstignore
CNORfuzzy/ChangeLog
CNORfuzzy/DESCRIPTION
CNORfuzzy/NAMESPACE
CNORfuzzy/R
CNORfuzzy/R/CNORwrapFuzzy.R CNORfuzzy/R/cSimulator.R CNORfuzzy/R/compileMultiRes.R CNORfuzzy/R/computeScoreFuzzy.R CNORfuzzy/R/defaultParametersFuzzy.R CNORfuzzy/R/gaDiscreteT1.R CNORfuzzy/R/getEC50.R CNORfuzzy/R/getMeanFuzzy.R CNORfuzzy/R/getMeanModel.R CNORfuzzy/R/getRefinedModel.R CNORfuzzy/R/interpretDiscreteGA.R CNORfuzzy/R/plotMeanFuzzyFit.R CNORfuzzy/R/prep4simFuzzy.R CNORfuzzy/R/rSimFuzzyT1.R CNORfuzzy/R/rSimulator.R CNORfuzzy/R/reduceFuzzy.R CNORfuzzy/R/removeRedundant.R CNORfuzzy/R/simFuzzyT1.R CNORfuzzy/R/simulate.R CNORfuzzy/R/writeFuzzyNetwork.R
CNORfuzzy/build
CNORfuzzy/build/vignette.rds
CNORfuzzy/inst
CNORfuzzy/inst/NEWS.Rd
CNORfuzzy/inst/doc
CNORfuzzy/inst/doc/CNORfuzzy-vignette.R
CNORfuzzy/inst/doc/CNORfuzzy-vignette.Rnw
CNORfuzzy/inst/doc/CNORfuzzy-vignette.pdf
CNORfuzzy/inst/unitTests
CNORfuzzy/inst/unitTests/test_CNORwrapFuzzy.R
CNORfuzzy/inst/unitTests/test_computeScore.R
CNORfuzzy/man
CNORfuzzy/man/CNORfuzzy-package.Rd CNORfuzzy/man/CNORwrapFuzzy.Rd CNORfuzzy/man/compileMultiRes.Rd CNORfuzzy/man/computeScoreFuzzy.Rd CNORfuzzy/man/defaultParametersFuzzy.Rd CNORfuzzy/man/gaDiscreteT1.Rd CNORfuzzy/man/getRefinedModel.Rd CNORfuzzy/man/interpretDiscreteGA.Rd CNORfuzzy/man/plotMeanFuzzyFit.Rd CNORfuzzy/man/prep4simFuzzy.Rd CNORfuzzy/man/reduceFuzzy.Rd CNORfuzzy/man/simFuzzyT1.Rd CNORfuzzy/man/writeFuzzyNetwork.Rd
CNORfuzzy/src
CNORfuzzy/src/simulatorT1.c
CNORfuzzy/tests
CNORfuzzy/tests/runTests.R
CNORfuzzy/vignettes
CNORfuzzy/vignettes/CNORfuzzy-vignette-FullAnalysis.pdf
CNORfuzzy/vignettes/CNORfuzzy-vignette-FullAnalysis2.pdf
CNORfuzzy/vignettes/CNORfuzzy-vignette-FullAnalysis3.pdf
CNORfuzzy/vignettes/CNORfuzzy-vignette.Rnw
CNORfuzzy/vignettes/README.txt
CNORfuzzy/vignettes/output_dream_PKN.dot
CNORfuzzy/vignettes/output_dream_PKN.png
CNORfuzzy/vignettes/output_dream_PKN.sif
CNORfuzzy/vignettes/output_dream_PKN.svg
CNORfuzzy/vignettes/output_dream_TimesPKN.EA
CNORfuzzy/vignettes/output_dream_nodesPKN.NA
CNORfuzzy/vignettes/tf1.pdf
CNORfuzzy/vignettes/tf2.pdf

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