Description Usage Arguments Value Author(s)

View source: R/computeScoreFuzzy.R

compute and return score of a model (cut using a bitstring).

1 2 | ```
computeScoreFuzzy(CNOlist, model,simList=NULL, indexList=NULL, paramsList,
intString=NULL, sizeFac=0.0001,NAFac=1)
``` |

`CNOlist` |
a CNOlist on which the score is based (based on valueSignals[[2]], i.e. data at t1) |

`model` |
a model list |

`simList` |
a list that contains additional fields for the simulator, as created by prep4sim applied to the model above |

`indexList` |
a list of indexes of species stimulated/inhibited/signals, as produced by indexfinder applied on the model and CNOlist above |

`paramsList` |
list of parameters. See defaultParametersFuzzy |

`intString` |
a bitstring of the same size as the number of reactions in the model above |

`sizeFac` |
the scaling factor for the size term in the objective function, default to 0.0001 |

`NAFac` |
the scaling factor for the NA term in the objective function, default to 1 |

`score` |
See gaBinaryT1 for details |

T. Cokelaer

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