computeScoreFuzzy: Compute Score of a model compared to the data for a given...

Description Usage Arguments Value Author(s)

Description

compute and return score of a model (cut using a bitstring).

Usage

1
2
computeScoreFuzzy(CNOlist, model,simList=NULL, indexList=NULL, paramsList, 
    intString=NULL, sizeFac=0.0001,NAFac=1)

Arguments

CNOlist

a CNOlist on which the score is based (based on valueSignals[[2]], i.e. data at t1)

model

a model list

simList

a list that contains additional fields for the simulator, as created by prep4sim applied to the model above

indexList

a list of indexes of species stimulated/inhibited/signals, as produced by indexfinder applied on the model and CNOlist above

paramsList

list of parameters. See defaultParametersFuzzy

intString

a bitstring of the same size as the number of reactions in the model above

sizeFac

the scaling factor for the size term in the objective function, default to 0.0001

NAFac

the scaling factor for the NA term in the objective function, default to 1

Value

score

See gaBinaryT1 for details

Author(s)

T. Cokelaer



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