writeFuzzyNetwork: Despict the network results of training a cFL model to data...

Description Usage Arguments Details Value Note Author(s) See Also Examples

View source: R/writeFuzzyNetwork.R

Description

Fuzzy network results output.

Usage

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writeFuzzyNetwork(postRefThresh, allFinalMSEs, allRes, tag=NULL,verbose=FALSE)

Arguments

postRefThresh

Post refinement threshold (selection threshold) chosen from plot produced by compileMultiRes

allFinalMSEs

matrix containing MSEs produced by compileMultiRes

allRes

list containing all results produced by compileMultiRes

tag

String to include in filename of pdf plot

verbose

If extra warnings should be displayed

Details

The weights of the edges are computed as the mean across models using post refinement threshold (selection threshold) to choose reduced refined model resulting from each run.

As with writeNetwork, this function maps back the edges weights from the optimised (expanded and compressed) model to the original model. The mapping back only works if the path has length 2 at most (i.e. you have node1-comp1-comp2-node2, where comp refer to nodes that have been compressed).

Value

This function does not have any output, it just writes a SIF file, an edge attribute file, and a node attribute file

Note

The mapback of this function is still an open question, even in the Matlab version. Future developments will include more robust versions of the mapping back algorithm, probably as a separate mapback function.

Author(s)

M.K. Morris based on code by C. Terfve

See Also

writeNetwork

Examples

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        data(ToyModel, package="CellNOptR")
        data(CNOlistToy,package="CellNOptR")
        paramsList = defaultParametersFuzzy(CNOlistToy, ToyModel)
        N = 10
        allRes = list()
 ## Not run: 
        for (i in 1:N){
            Res = CNORwrapFuzzy(CNOlistToy, ToyModel, paramsList)
            allRes[[i]] = Res
        }

        summary = compileMultiRes(allRes)
        summary$allFinalMSEs
        summary$allFinalNumParams
    
        writeFuzzyNetwork(postRefThresh, summary$allFinalMSEs, allRes)
    
## End(Not run)

CNORfuzzy documentation built on Nov. 1, 2018, 2:23 a.m.