API for CNVRanger
Summarization and expression/phenotype association of CNV ranges
| Global functions | |
|---|---|
| .approxP | Source code |
| .assoPrCNV | Source code |
| .checkConvertCNVs | Source code |
| .classifyRegs | Source code |
| .clusterCalls | Source code |
| .createFolderTree | Source code |
| .densityPopRanges | Source code |
| .estimateRecurrence | Source code |
| .excludeNeutralRanges | Source code |
| .extendRegions | Source code |
| .formatResult | Source code |
| .freadImport | Source code |
| .getFreq | Source code |
| .getMergeIndex | Source code |
| .getPLINK | Source code |
| .getROHits | Source code |
| .getStates | Source code |
| .getType | Source code |
| .largest | Source code |
| .loadPhen | Source code |
| .loadToMergeCNV | Source code |
| .permP | Source code |
| .preprocRnaSeq | Source code |
| .prodCNVseg | Source code |
| .prodGvar | Source code |
| .prodGvarLRR | Source code |
| .prodPLINKfam | Source code |
| .prodPLINKgvar | Source code |
| .prodPLINKmap | Source code |
| .prodProbes | Source code |
| .pruneMultiAssign | Source code |
| .qqunifPlot | Source code |
| .recodeCNVgenotype | Source code |
| .replaceSNPtoCNV | Source code |
| .roPopRanges | Source code |
| .runPLINK | Source code |
| .scoreRegion | Source code |
| .snpgdsGetGenoCNV | Source code |
| .testCnvExpr | Source code |
| .weightedmean | Source code |
| .window2integer | Source code |
| .writeProbesCNV | Source code |
| cnvEQTL | Man page Source code |
| cnvGWAS | Man page Source code |
| cnvOncoPrint | Man page Source code |
| estlambda | Source code |
| generateGDS | Man page Source code |
| importLrrBaf | Man page Source code |
| plotEQTL | Man page Source code |
| plotManhattan | Man page Source code |
| plotRecurrentRegions | Man page Source code |
| populationRanges | Man page Source code |
| setupCnvGWAS | Man page Source code |
| testit | Source code |
