Man pages for CODEX
A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
| bambedObjDemo | Demo data pre-stored for bambedObj. |
| choiceofK | Determine the number of latent factors K. |
| CODEX-package | A Normalization and Copy Number Variation Detection Method... |
| coverageObjDemo | Demo data pre-stored for coverageObj. |
| gcDemo | Demo data pre-stored for GC content. |
| getbambed | Get bam file directories, sample names, and exonic positions |
| getcoverage | Get depth of coverage from whole exome sequencing |
| getgc | Get GC content for each exonic target |
| getmapp | Get mappability for each exonic target |
| mappability | Pre-computed mappabilities |
| mappDemo | Demo data pre-stored for mappability. |
| mapp_ref | Position reference for pre-computed mappability results. |
| normalize | Normalization of read depth from whole exome sequencing |
| normalize2 | Normalization of read depth from whole exome sequencing under... |
| normObjDemo | Demo data pre-stored for normObj. |
| qc | Quality control procedure for depth of coverage |
| qcObjDemo | Demo data pre-stored for qcObj. |
| segment | Recursive segmentation algorithm for CNV detection and... |
