getgc: Get GC content for each exonic target
In CODEX: A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
Description
Usage
Arguments
Value
Author(s)
References
See Also
Examples
Description
Computes GC content for each exon. Will be later used in QC procedure and
normalization.
Usage
1
getgc(chr, ref)
Arguments
chr
Chromosome returned from getbambed
ref
IRanges object returned from getbambed
Value
Vector of GC content for each exon.
Author(s)
Yuchao Jiang yuchaoj@wharton.upenn.edu
References
Team TBD. BSgenome.Hsapiens.UCSC.hg19: Full genome sequences for Homo sapiens
(UCSC version hg19). R package version 1.3.99.
See Also
Examples
1
2
CODEX documentation built on Nov. 8, 2020, 8:22 p.m.
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Description Usage Arguments Value Author(s) References See Also Examples
Description
Computes GC content for each exon. Will be later used in QC procedure and normalization.
Usage
1 | getgc(chr, ref)
|
Arguments
chr |
Chromosome returned from |
ref |
IRanges object returned from |
Value
Vector of GC content for each exon.
Author(s)
Yuchao Jiang yuchaoj@wharton.upenn.edu
References
Team TBD. BSgenome.Hsapiens.UCSC.hg19: Full genome sequences for Homo sapiens (UCSC version hg19). R package version 1.3.99.
See Also
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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