getgc: Get GC content for each exonic target

Description Usage Arguments Value Author(s) References See Also Examples

Description

Computes GC content for each exon. Will be later used in QC procedure and normalization.

Usage

1
getgc(chr, ref)

Arguments

chr

Chromosome returned from getbambed

ref

IRanges object returned from getbambed

Value

Vector of GC content for each exon.

Author(s)

Yuchao Jiang yuchaoj@wharton.upenn.edu

References

Team TBD. BSgenome.Hsapiens.UCSC.hg19: Full genome sequences for Homo sapiens (UCSC version hg19). R package version 1.3.99.

See Also

getbambed, qc, normalize

Examples

1
2
ref <- IRanges(st = 51207851, end = 51207982)
gc <- getgc(chr = 22, ref)


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