getgc: Get GC content for each exonic target

Description Usage Arguments Value Author(s) References See Also Examples

View source: R/getgc.R

Description

Computes GC content for each exon. Will be later used in QC procedure and normalization.

Usage

1
getgc(chr, ref)

Arguments

chr

Chromosome returned from getbambed

ref

IRanges object returned from getbambed

Value

Vector of GC content for each exon.

Author(s)

Yuchao Jiang yuchaoj@wharton.upenn.edu

References

Team TBD. BSgenome.Hsapiens.UCSC.hg19: Full genome sequences for Homo sapiens (UCSC version hg19). R package version 1.3.99.

See Also

getbambed, qc, normalize

Examples

1
2
ref <- IRanges(st = 51207851, end = 51207982)
gc <- getgc(chr = 22, ref)

CODEX documentation built on May 31, 2017, 3:09 p.m.

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