COHCAP: CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data

COHCAP (pronounced "co-cap") provides a pipeline to analyze single-nucleotide resolution methylation data (Illumina 450k/EPIC methylation array, targeted BS-Seq, etc.). It provides differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, with visualizaton options. Discussion Group: https://sourceforge.net/p/cohcap/discussion/bioconductor/

Package details

AuthorCharles Warden <cwarden@coh.org>, Yate-Ching Yuan <yyuan@coh.org>, Xiwei Wu <xwu@coh.org>
Bioconductor views DNAMethylation DifferentialMethylation Epigenetics MethylSeq Microarray
MaintainerCharles Warden <cwarden@coh.org>
LicenseGPL-3
Version1.34.1
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("COHCAP")

Try the COHCAP package in your browser

Any scripts or data that you put into this service are public.

COHCAP documentation built on May 2, 2020, 2:01 a.m.