COHCAP: CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data

COHCAP (pronounced "co-cap") provides a pipeline to analyze single-nucleotide resolution methylation data (Illumina 450k/EPIC methylation array, targeted BS-Seq, etc.). It provides differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, with visualizaton options. Discussion Group: https://sourceforge.net/p/cohcap/discussion/bioconductor/

Package details

AuthorCharles Warden <cwarden@coh.org>, Yate-Ching Yuan <yyuan@coh.org>, Xiwei Wu <xwu@coh.org>
Bioconductor views DNAMethylation DifferentialMethylation Epigenetics MethylSeq Microarray
MaintainerCharles Warden <cwarden@coh.org>
LicenseGPL-3
Version1.36.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("COHCAP")

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COHCAP documentation built on Nov. 8, 2020, 8:07 p.m.