Man pages for CRISPRseek
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems

annotateOffTargetsannotate off targets
buildFeatureVectorForScoringBuild feature vectors
calculategRNAEfficiencyCalculate gRNA Efficiency
compare2SequencesCompare 2 input sequences/sequence sets for possible guide...
CRISPRseek-packageDesign of target-specific guide RNAs (gRNAs) in CRISPR-Cas9,...
filtergRNAFilter gRNAs
filterOffTargetfilter off targets and generate reports.
findgRNAsFind potential gRNAs
foldgRNAsFold gRNAs with the gRNA backbone constant region
getOfftargetScoreCalculate score for each off target
isPatternUniqueOutput whether the input patterns occurs only once in the...
offTargetAnalysisDesign of target-specific guide RNAs for CRISPR-Cas9 system...
searchHitsSearch for off targets in a sequence as DNAString
searchHits2Search for off targets
translatePatterntranslate pattern from IUPAC Extended Genetic Alphabet to...
uniqueREsOutput restriction enzymes that recognize only the gRNA...
writeHitsWrite the hits of sequence search from a sequence to a file
writeHits2Write the hits of sequence search to a file
CRISPRseek documentation built on May 2, 2018, 2:36 a.m.