isPatternUnique: Output whether the input patterns occurs only once in the...
In CRISPRseek: Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/isPatternUnique.R
Description
Input a sequence and a list of patterns and determine if the patterns occurs only once in the sequence. Used for determining whether a RE site in gRNA also occurs in the flanking region.
Usage
1
Arguments
seq
flanking sequence of a gRNA
patterns
patterns as DNAStringSet, such as a list of RE sites
Value
returns a character vectors containing the uniqueness of each pattern/RE site
Author(s)
Lihua Julie Zhu
Examples
1
2
3
4
5
seq <- "TGGATTGTATAATCAGCATGGATTTGGAAC"
patterns <- DNAStringSet(c("TGG", "TGGA", "TGGATA", "TTGGAAC", ""))
isPatternUnique(seq, patterns)
isPatternUnique(seq)
isPatternUnique(patterns)
CRISPRseek documentation built on Jan. 14, 2021, 2:50 a.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/isPatternUnique.R
Description
Input a sequence and a list of patterns and determine if the patterns occurs only once in the sequence. Used for determining whether a RE site in gRNA also occurs in the flanking region.
Usage
1 |
Arguments
seq |
flanking sequence of a gRNA |
patterns |
patterns as DNAStringSet, such as a list of RE sites |
Value
returns a character vectors containing the uniqueness of each pattern/RE site
Author(s)
Lihua Julie Zhu
Examples
1 2 3 4 5 | seq <- "TGGATTGTATAATCAGCATGGATTTGGAAC"
patterns <- DNAStringSet(c("TGG", "TGGA", "TGGATA", "TTGGAAC", ""))
isPatternUnique(seq, patterns)
isPatternUnique(seq)
isPatternUnique(patterns)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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