Files in CellBench

Construct Benchmarks for Single Cell Analysis Methods

NEWS.md README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

data/sample_sce_data.rda

R/cellbench_casestudy.R R/any_task_errors.R R/time_methods.R R/set_options.R R/load_data.R R/utils_check.R R/apply_methods.R R/cellbench_file.R R/utils.R R/sample_sce_data.R R/fn_list.R R/utils_sampling.R R/is_task_error.R R/zzz.R R/fn_arg_seq.R R/alias.R R/benchmark_timing_tbl_methods.R R/data_list.R R/package.R R/benchmark_tbl_methods.R R/memoise.R R/print.R R/utils_filter.R vignettes/Timing.Rmd vignettes/TidyversePatterns.Rmd vignettes/WritingWrappers.Rmd vignettes/Introduction.Rmd vignettes/DataManipulation.Rmd man/check_class.Rd man/cellbench_file.Rd man/sample_cells.Rd man/arrow_sep.Rd man/filter_zero_genes.Rd man/clear_cellbench_cache.Rd man/keep_high_count_genes.Rd man/mhead.Rd man/load_all_data.Rd man/any_task_errors.Rd man/set_cellbench_cache_path.Rd man/set_cellbench_threads.Rd man/pipeline_collapse.Rd man/keep_high_count_cells.Rd man/summary.benchmark_tbl.Rd man/cellbench_case_study.Rd man/strip_timing.Rd man/CellBench-package.Rd man/print.task_error.Rd man/apply_methods.Rd man/all_unique.Rd man/time_methods.Rd man/keep_high_var_genes.Rd man/set_cellbench_bpparam.Rd man/clear_cached_datasets.Rd man/as_pipeline_list.Rd man/sample_genes.Rd man/fn_arg_seq.Rd man/print.fn_arg_seq.Rd man/fn_list.Rd man/unpack_timing.Rd man/cache_method.Rd man/sample_sce_data.Rd man/is.task_error.Rd man/data_list.Rd tests/testthat.R tests/testthat/test-set_options.R tests/testthat/test-fn_arg_seq.R tests/testthat/test-data_list.R tests/testthat/test-benchmark_timing_tbl_methods.R tests/testthat/test-fn_list.R tests/testthat/test-memoise.R tests/testthat/test-cellbench_file.R tests/testthat/test-apply_methods.R tests/testthat/test-utils_filter.R tests/testthat/test-utils_sampling.R tests/testthat/test-utils.R tests/testthat/test-utils_check.R tests/testthat/test-time_methods.R tests/testthat/test-benchmark_tbl_methods.R

inst/doc/Timing.html

inst/doc/Timing.Rmd inst/doc/Timing.R inst/doc/TidyversePatterns.Rmd inst/doc/DataManipulation.pdf inst/doc/Introduction.R inst/doc/WritingWrappers.Rmd inst/doc/Introduction.Rmd

inst/doc/CellBenchCaseStudy.html

inst/doc/WritingWrappers.html

inst/doc/DataManipulation.R inst/doc/DataManipulation.Rmd inst/doc/TidyversePatterns.R

inst/doc/Introduction.html

inst/doc/TidyversePatterns.pdf inst/doc/WritingWrappers.R inst/prebuilt-doc/ParameterTesting.pdf inst/prebuilt-doc/UsersGuide.pdf inst/prebuilt-doc/Examples.Rmd inst/prebuilt-doc/ImputeBenchmark.Rmd inst/prebuilt-doc/UsersGuide.Rmd inst/prebuilt-doc/CreatingBenchmarks.Rmd inst/prebuilt-doc/ParameterTesting.Rmd

inst/extdata/celseq_sce_sample.rds

inst/extdata/10x_sce_sample.rds

inst/case-study/CellBenchCaseStudy.html

CellBench documentation built on Nov. 8, 2020, 5:11 p.m.