sample_sce_data: This is data for testing functions in CellBench.
In CellBench: Construct Benchmarks for Single Cell Analysis Methods
Description
Usage
Format
See Also
Description
A dataset containing 200 genes and 50 cells randomly sampled from the CelSeq
mRNA mixture dataset, each sample is a mixture of mRNA material from 3
different human adenocarcinoma cell lines. Useful for quick prototyping of
method wrappers.
Usage
1
Format
A SingleCellExperiment object with sample annotations in
colData(sample_sce_data). The annotation contains various QC metrics
as well as the cell line mixture proportions
- H2228_prop
proportion of mRNA from H2228 cell line
- H1975_prop
proportion of mRNA from H1975 cell line
- HCC827_prop
proportion of mRNA from HCC827 cell line
See Also
CellBench documentation built on Nov. 8, 2020, 5:11 p.m.
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Description Usage Format See Also
Description
A dataset containing 200 genes and 50 cells randomly sampled from the CelSeq mRNA mixture dataset, each sample is a mixture of mRNA material from 3 different human adenocarcinoma cell lines. Useful for quick prototyping of method wrappers.
Usage
1 |
Format
A SingleCellExperiment object with sample annotations in
colData(sample_sce_data). The annotation contains various QC metrics
as well as the cell line mixture proportions
- H2228_prop
proportion of mRNA from H2228 cell line
- H1975_prop
proportion of mRNA from H1975 cell line
- HCC827_prop
proportion of mRNA from HCC827 cell line
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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