cutCNOlist: Cut a CNOlist structure according to a model

In CellNOptR: Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

Description

The MIDAS file may contain species that are not contained in the model. If you want to remove cues and signals from your CNOlist that are not contained in the model, you can use this function by using the parameter model. It can also be used to remove some time points by using the parameter cutTimeIndices. Both parameters can be used at the same time and at least one of them must be provided.

Usage

    cutCNOlist(cnolist, model, cutTimeIndices, verbose=FALSE)

Arguments

cnolist	the CNOlist structure
model	the model
cutTimeIndices	the time indices to remove
verbose	Set it to True to get the signals and cues not found in the model

Value

cutCNOlist

the new CNOlist object

Note

added in version 1.5.10

Author(s)

T. Cokelaer

See Also

CNOlist-class

CellNOptR documentation built on Nov. 8, 2020, 6:58 p.m.