selectTrajectory: Select component from trajectory graph
In CellTrails: Reconstruction, visualization and analysis of branching trajectories
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Retains a single component of a trajectory graph.
Usage
1
selectTrajectory(sce, component)
Arguments
sce
A SingleCellExperiment object
component
Number of component to be selected
Details
The construction of a trajectory graph may result in a forest
having multiple tree components, which may represent individual
trajectories or isolated nodes. This method should be used to extract a
single component from the graph. A component is
identified by its (integer) number.
Diagnostic messages
An error is thrown if the states have not been connected yet;
function connectStates needs to be called first. An
error is thrown if an unknown component (number) is selected.
Value
An updated SingleCellExperiment object
Author(s)
Daniel C. Ellwanger
See Also
Examples
1
2
3
4
5
# Example data
data(exSCE)
# Select trajectory
exSCE <- selectTrajectory(exSCE, component=1)
CellTrails documentation built on Nov. 8, 2020, 5:53 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Retains a single component of a trajectory graph.
Usage
1 | selectTrajectory(sce, component)
|
Arguments
sce |
A |
component |
Number of component to be selected |
Details
The construction of a trajectory graph may result in a forest
having multiple tree components, which may represent individual
trajectories or isolated nodes. This method should be used to extract a
single component from the graph. A component is
identified by its (integer) number.
Diagnostic messages
An error is thrown if the states have not been connected yet;
function connectStates needs to be called first. An
error is thrown if an unknown component (number) is selected.
Value
An updated SingleCellExperiment object
Author(s)
Daniel C. Ellwanger
See Also
Examples
1 2 3 4 5 | # Example data
data(exSCE)
# Select trajectory
exSCE <- selectTrajectory(exSCE, component=1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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