oligoFrequency: get the oligonucleotide frequency
In ChIPpeakAnno: Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Prepare the oligonucleotide frequency for given Markov order.
Usage
1
oligoFrequency(sequence, MarkovOrder = 3L, last = 1e+06)
Arguments
sequence
The sequences packaged in DNAStringSet, DNAString object or
output of function getAllPeakSequence.
MarkovOrder
Markov order.
last
The sequence size to be analyzed.
Value
A numeric vector.
Author(s)
Jianhong Ou
See Also
See Also as oligoSummary
Examples
1
2
3
library(seqinr)
library(Biostrings)
oligoFrequency(DNAString("AATTCGACGTACAGATGACTAGACT"))
ChIPpeakAnno documentation built on April 1, 2021, 6:01 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Prepare the oligonucleotide frequency for given Markov order.
Usage
1 | oligoFrequency(sequence, MarkovOrder = 3L, last = 1e+06)
|
Arguments
sequence |
The sequences packaged in DNAStringSet, DNAString object or output of function getAllPeakSequence. |
MarkovOrder |
Markov order. |
last |
The sequence size to be analyzed. |
Value
A numeric vector.
Author(s)
Jianhong Ou
See Also
See Also as oligoSummary
Examples
1 2 3 | library(seqinr)
library(Biostrings)
oligoFrequency(DNAString("AATTCGACGTACAGATGACTAGACT"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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