ComplexHeatmap: Making Complex Heatmaps

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Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.

Author
Zuguang Gu
Date of publication
2016-10-14 00:00:00
Maintainer
Zuguang Gu <z.gu@dkfz.de>
License
GPL (>= 2)
Version
1.12.0
URLs

View on Bioconductor

Files in this package

ComplexHeatmap/DESCRIPTION
ComplexHeatmap/NAMESPACE
ComplexHeatmap/NEWS
ComplexHeatmap/R
ComplexHeatmap/R/00_S4_generic_methods.R
ComplexHeatmap/R/AdditiveUnit-class.R
ComplexHeatmap/R/ColorMapping-class.R
ComplexHeatmap/R/Heatmap-class.R
ComplexHeatmap/R/HeatmapAnnotation-class.R
ComplexHeatmap/R/HeatmapList-class.R
ComplexHeatmap/R/HeatmapList-get_order.R
ComplexHeatmap/R/Legend.R
ComplexHeatmap/R/SingleAnnotation-class.R
ComplexHeatmap/R/annotation_fun.R
ComplexHeatmap/R/decorate.R
ComplexHeatmap/R/densityHeatmap.R
ComplexHeatmap/R/enhanced.R
ComplexHeatmap/R/global.R
ComplexHeatmap/R/is_abs_unit.R
ComplexHeatmap/R/oncoPrint.R
ComplexHeatmap/R/overview.R
ComplexHeatmap/R/plotDataFrame.R
ComplexHeatmap/R/selectArea.R
ComplexHeatmap/R/summary.R
ComplexHeatmap/R/utils.R
ComplexHeatmap/TODO
ComplexHeatmap/build
ComplexHeatmap/build/vignette.rds
ComplexHeatmap/inst
ComplexHeatmap/inst/CITATION
ComplexHeatmap/inst/doc
ComplexHeatmap/inst/doc/s1.introduction.R
ComplexHeatmap/inst/doc/s1.introduction.Rmd
ComplexHeatmap/inst/doc/s1.introduction.html
ComplexHeatmap/inst/doc/s2.single_heatmap.R
ComplexHeatmap/inst/doc/s2.single_heatmap.Rmd
ComplexHeatmap/inst/doc/s2.single_heatmap.html
ComplexHeatmap/inst/doc/s3.a_list_of_heatmaps.R
ComplexHeatmap/inst/doc/s3.a_list_of_heatmaps.Rmd
ComplexHeatmap/inst/doc/s3.a_list_of_heatmaps.html
ComplexHeatmap/inst/doc/s4.heatmap_annotation.R
ComplexHeatmap/inst/doc/s4.heatmap_annotation.Rmd
ComplexHeatmap/inst/doc/s4.heatmap_annotation.html
ComplexHeatmap/inst/doc/s5.legend.R
ComplexHeatmap/inst/doc/s5.legend.Rmd
ComplexHeatmap/inst/doc/s5.legend.html
ComplexHeatmap/inst/doc/s6.heatmap_decoration.R
ComplexHeatmap/inst/doc/s6.heatmap_decoration.Rmd
ComplexHeatmap/inst/doc/s6.heatmap_decoration.html
ComplexHeatmap/inst/doc/s7.interactive.R
ComplexHeatmap/inst/doc/s7.interactive.Rmd
ComplexHeatmap/inst/doc/s7.interactive.html
ComplexHeatmap/inst/doc/s8.oncoprint.R
ComplexHeatmap/inst/doc/s8.oncoprint.Rmd
ComplexHeatmap/inst/doc/s8.oncoprint.html
ComplexHeatmap/inst/doc/s9.examples.R
ComplexHeatmap/inst/doc/s9.examples.Rmd
ComplexHeatmap/inst/doc/s9.examples.html
ComplexHeatmap/inst/extdata
ComplexHeatmap/inst/extdata/gene_expression.rds
ComplexHeatmap/inst/extdata/gr.rds
ComplexHeatmap/inst/extdata/measles.rds
ComplexHeatmap/inst/extdata/meth.rds
ComplexHeatmap/inst/extdata/sample_order.txt
ComplexHeatmap/inst/extdata/tcga_lung_adenocarcinoma_provisional_ras_raf_mek_jnk_signalling.txt
ComplexHeatmap/inst/tests
ComplexHeatmap/man
ComplexHeatmap/man/AdditiveUnit-class.rd
ComplexHeatmap/man/AdditiveUnit.rd
ComplexHeatmap/man/ColorMapping-class.rd
ComplexHeatmap/man/ColorMapping.rd
ComplexHeatmap/man/ComplexHeatmap-package.rd
ComplexHeatmap/man/Heatmap-class.rd
ComplexHeatmap/man/Heatmap.rd
ComplexHeatmap/man/HeatmapAnnotation-class.rd
ComplexHeatmap/man/HeatmapAnnotation.rd
ComplexHeatmap/man/HeatmapList-class.rd
ComplexHeatmap/man/HeatmapList.rd
ComplexHeatmap/man/Legend.rd
ComplexHeatmap/man/SingleAnnotation-class.rd
ComplexHeatmap/man/SingleAnnotation.rd
ComplexHeatmap/man/add.AdditiveUnit.rd
ComplexHeatmap/man/add_heatmap-Heatmap-method.rd
ComplexHeatmap/man/add_heatmap-HeatmapAnnotation-method.rd
ComplexHeatmap/man/add_heatmap-HeatmapList-method.rd
ComplexHeatmap/man/add_heatmap-dispatch.rd
ComplexHeatmap/man/anno_barplot.rd
ComplexHeatmap/man/anno_boxplot.rd
ComplexHeatmap/man/anno_density.rd
ComplexHeatmap/man/anno_histogram.rd
ComplexHeatmap/man/anno_link.rd
ComplexHeatmap/man/anno_oncoprint_barplot.rd
ComplexHeatmap/man/anno_points.rd
ComplexHeatmap/man/anno_text.rd
ComplexHeatmap/man/annotation_legend_size-HeatmapList-method.rd
ComplexHeatmap/man/color_mapping_legend-ColorMapping-method.rd
ComplexHeatmap/man/columnAnnotation.rd
ComplexHeatmap/man/column_anno_barplot.rd
ComplexHeatmap/man/column_anno_boxplot.rd
ComplexHeatmap/man/column_anno_density.rd
ComplexHeatmap/man/column_anno_histogram.rd
ComplexHeatmap/man/column_anno_link.rd
ComplexHeatmap/man/column_anno_points.rd
ComplexHeatmap/man/column_anno_text.rd
ComplexHeatmap/man/column_dend-Heatmap-method.rd
ComplexHeatmap/man/column_dend-HeatmapList-method.rd
ComplexHeatmap/man/column_dend-dispatch.rd
ComplexHeatmap/man/column_order-Heatmap-method.rd
ComplexHeatmap/man/column_order-HeatmapList-method.rd
ComplexHeatmap/man/column_order-dispatch.rd
ComplexHeatmap/man/component_height-Heatmap-method.rd
ComplexHeatmap/man/component_height-HeatmapList-method.rd
ComplexHeatmap/man/component_height-dispatch.rd
ComplexHeatmap/man/component_width-Heatmap-method.rd
ComplexHeatmap/man/component_width-HeatmapList-method.rd
ComplexHeatmap/man/component_width-dispatch.rd
ComplexHeatmap/man/decorate_annotation.rd
ComplexHeatmap/man/decorate_column_dend.rd
ComplexHeatmap/man/decorate_column_names.rd
ComplexHeatmap/man/decorate_column_title.rd
ComplexHeatmap/man/decorate_dend.rd
ComplexHeatmap/man/decorate_dimnames.rd
ComplexHeatmap/man/decorate_heatmap_body.rd
ComplexHeatmap/man/decorate_row_dend.rd
ComplexHeatmap/man/decorate_row_names.rd
ComplexHeatmap/man/decorate_row_title.rd
ComplexHeatmap/man/decorate_title.rd
ComplexHeatmap/man/densityHeatmap.rd
ComplexHeatmap/man/dist2.rd
ComplexHeatmap/man/draw-Heatmap-method.rd
ComplexHeatmap/man/draw-HeatmapAnnotation-method.rd
ComplexHeatmap/man/draw-HeatmapList-method.rd
ComplexHeatmap/man/draw-SingleAnnotation-method.rd
ComplexHeatmap/man/draw-dispatch.rd
ComplexHeatmap/man/draw_annotation-Heatmap-method.rd
ComplexHeatmap/man/draw_annotation_legend-HeatmapList-method.rd
ComplexHeatmap/man/draw_dend-Heatmap-method.rd
ComplexHeatmap/man/draw_dimnames-Heatmap-method.rd
ComplexHeatmap/man/draw_heatmap_body-Heatmap-method.rd
ComplexHeatmap/man/draw_heatmap_legend-HeatmapList-method.rd
ComplexHeatmap/man/draw_heatmap_list-HeatmapList-method.rd
ComplexHeatmap/man/draw_title-Heatmap-method.rd
ComplexHeatmap/man/draw_title-HeatmapList-method.rd
ComplexHeatmap/man/draw_title-dispatch.rd
ComplexHeatmap/man/enhanced_basicplot.rd
ComplexHeatmap/man/get_color_mapping_list-HeatmapAnnotation-method.rd
ComplexHeatmap/man/get_color_mapping_param_list-HeatmapAnnotation-method.rd
ComplexHeatmap/man/grid.dendrogram.rd
ComplexHeatmap/man/heatmap_legend_size-HeatmapList-method.rd
ComplexHeatmap/man/ht_global_opt.rd
ComplexHeatmap/man/is_abs_unit.rd
ComplexHeatmap/man/make_column_cluster-Heatmap-method.rd
ComplexHeatmap/man/make_layout-Heatmap-method.rd
ComplexHeatmap/man/make_layout-HeatmapList-method.rd
ComplexHeatmap/man/make_layout-dispatch.rd
ComplexHeatmap/man/make_row_cluster-Heatmap-method.rd
ComplexHeatmap/man/map_to_colors-ColorMapping-method.rd
ComplexHeatmap/man/max_text_height.rd
ComplexHeatmap/man/max_text_width.rd
ComplexHeatmap/man/oncoPrint.rd
ComplexHeatmap/man/plotDataFrame.rd
ComplexHeatmap/man/prepare-Heatmap-method.rd
ComplexHeatmap/man/rowAnnotation.rd
ComplexHeatmap/man/row_anno_barplot.rd
ComplexHeatmap/man/row_anno_boxplot.rd
ComplexHeatmap/man/row_anno_density.rd
ComplexHeatmap/man/row_anno_histogram.rd
ComplexHeatmap/man/row_anno_link.rd
ComplexHeatmap/man/row_anno_points.rd
ComplexHeatmap/man/row_anno_text.rd
ComplexHeatmap/man/row_dend-Heatmap-method.rd
ComplexHeatmap/man/row_dend-HeatmapList-method.rd
ComplexHeatmap/man/row_dend-dispatch.rd
ComplexHeatmap/man/row_order-Heatmap-method.rd
ComplexHeatmap/man/row_order-HeatmapList-method.rd
ComplexHeatmap/man/row_order-dispatch.rd
ComplexHeatmap/man/selectArea.rd
ComplexHeatmap/man/set_component_height-Heatmap-method.rd
ComplexHeatmap/man/show-ColorMapping-method.rd
ComplexHeatmap/man/show-Heatmap-method.rd
ComplexHeatmap/man/show-HeatmapAnnotation-method.rd
ComplexHeatmap/man/show-HeatmapList-method.rd
ComplexHeatmap/man/show-SingleAnnotation-method.rd
ComplexHeatmap/man/show-dispatch.rd
ComplexHeatmap/man/unify_mat_list.rd
ComplexHeatmap/tests
ComplexHeatmap/tests/test-all.R
ComplexHeatmap/tests/testthat
ComplexHeatmap/tests/testthat/test-ColorMapping-class.R
ComplexHeatmap/tests/testthat/test-Heatmap-class.R.nottest
ComplexHeatmap/tests/testthat/test-HeatmapAnnotation.R.nottest
ComplexHeatmap/tests/testthat/test-HeatmapList-class.R.nottest
ComplexHeatmap/tests/testthat/test-SingleAnnotation.R.nottest
ComplexHeatmap/tests/testthat/test-anno.R.nottest
ComplexHeatmap/tests/testthat/test-utils.R
ComplexHeatmap/vignettes
ComplexHeatmap/vignettes/custom.css
ComplexHeatmap/vignettes/design.R
ComplexHeatmap/vignettes/s1.introduction.Rmd
ComplexHeatmap/vignettes/s2.single_heatmap.Rmd
ComplexHeatmap/vignettes/s3.a_list_of_heatmaps.Rmd
ComplexHeatmap/vignettes/s4.heatmap_annotation.Rmd
ComplexHeatmap/vignettes/s5.legend.Rmd
ComplexHeatmap/vignettes/s6.heatmap_decoration.Rmd
ComplexHeatmap/vignettes/s7.interactive.Rmd
ComplexHeatmap/vignettes/s8.oncoprint.Rmd
ComplexHeatmap/vignettes/s9.examples.Rmd
ComplexHeatmap/vignettes/select_region.gif