ComplexHeatmap: Making Complex Heatmaps

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ComplexHeatmap")
AuthorZuguang Gu
Bioconductor views Sequencing Software Visualization
Date of publication2017-2-15 00:00:00
MaintainerZuguang Gu <z.gu@dkfz.de>
LicenseGPL (>= 2)
Version1.14.0
https://github.com/jokergoo/ComplexHeatmap

View on Bioconductor

Functions

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/00_S4_generic_methods.R R/AdditiveUnit-class.R R/ColorMapping-class.R R/Heatmap-class.R R/HeatmapAnnotation-class.R R/HeatmapList-class.R R/HeatmapList-get_order.R R/Legend.R R/SingleAnnotation-class.R R/annotation_fun.R R/decorate.R R/densityHeatmap.R R/enhanced.R R/global.R R/is_abs_unit.R R/oncoPrint.R R/overview.R R/plotDataFrame.R R/selectArea.R R/summary.R R/utils.R
TODO
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/s1.introduction.R
inst/doc/s1.introduction.Rmd
inst/doc/s1.introduction.html
inst/doc/s2.single_heatmap.R
inst/doc/s2.single_heatmap.Rmd
inst/doc/s2.single_heatmap.html
inst/doc/s3.a_list_of_heatmaps.R
inst/doc/s3.a_list_of_heatmaps.Rmd
inst/doc/s3.a_list_of_heatmaps.html
inst/doc/s4.heatmap_annotation.R
inst/doc/s4.heatmap_annotation.Rmd
inst/doc/s4.heatmap_annotation.html
inst/doc/s5.legend.R
inst/doc/s5.legend.Rmd
inst/doc/s5.legend.html
inst/doc/s6.heatmap_decoration.R
inst/doc/s6.heatmap_decoration.Rmd
inst/doc/s6.heatmap_decoration.html
inst/doc/s7.interactive.R
inst/doc/s7.interactive.Rmd
inst/doc/s7.interactive.html
inst/doc/s8.oncoprint.R
inst/doc/s8.oncoprint.Rmd
inst/doc/s8.oncoprint.html
inst/doc/s9.examples.R
inst/doc/s9.examples.Rmd
inst/doc/s9.examples.html
inst/extdata
inst/extdata/gene_expression.rds
inst/extdata/gr.rds
inst/extdata/measles.rds
inst/extdata/meth.rds
inst/extdata/sample_order.txt
inst/extdata/tcga_lung_adenocarcinoma_provisional_ras_raf_mek_jnk_signalling.txt
inst/tests
man
man/AdditiveUnit-class.rd
man/AdditiveUnit.rd
man/ColorMapping-class.rd
man/ColorMapping.rd
man/ComplexHeatmap-package.rd
man/Heatmap-class.rd
man/Heatmap.rd
man/HeatmapAnnotation-class.rd
man/HeatmapAnnotation.rd
man/HeatmapList-class.rd
man/HeatmapList.rd
man/Legend.rd
man/SingleAnnotation-class.rd
man/SingleAnnotation.rd
man/add.AdditiveUnit.rd
man/add_heatmap-Heatmap-method.rd
man/add_heatmap-HeatmapAnnotation-method.rd
man/add_heatmap-HeatmapList-method.rd
man/add_heatmap-dispatch.rd
man/anno_barplot.rd
man/anno_boxplot.rd
man/anno_density.rd
man/anno_histogram.rd
man/anno_link.rd
man/anno_oncoprint_barplot.rd
man/anno_points.rd
man/anno_text.rd
man/annotation_legend_size-HeatmapList-method.rd
man/color_mapping_legend-ColorMapping-method.rd
man/columnAnnotation.rd
man/column_anno_barplot.rd
man/column_anno_boxplot.rd
man/column_anno_density.rd
man/column_anno_histogram.rd
man/column_anno_link.rd
man/column_anno_points.rd
man/column_anno_text.rd
man/column_dend-Heatmap-method.rd
man/column_dend-HeatmapList-method.rd
man/column_dend-dispatch.rd
man/column_order-Heatmap-method.rd
man/column_order-HeatmapList-method.rd
man/column_order-dispatch.rd
man/component_height-Heatmap-method.rd
man/component_height-HeatmapList-method.rd
man/component_height-dispatch.rd
man/component_width-Heatmap-method.rd
man/component_width-HeatmapList-method.rd
man/component_width-dispatch.rd
man/decorate_annotation.rd
man/decorate_column_dend.rd
man/decorate_column_names.rd
man/decorate_column_title.rd
man/decorate_dend.rd
man/decorate_dimnames.rd
man/decorate_heatmap_body.rd
man/decorate_row_dend.rd
man/decorate_row_names.rd
man/decorate_row_title.rd
man/decorate_title.rd
man/densityHeatmap.rd
man/dist2.rd
man/draw-Heatmap-method.rd
man/draw-HeatmapAnnotation-method.rd
man/draw-HeatmapList-method.rd
man/draw-SingleAnnotation-method.rd
man/draw-dispatch.rd
man/draw_annotation-Heatmap-method.rd
man/draw_annotation_legend-HeatmapList-method.rd
man/draw_dend-Heatmap-method.rd
man/draw_dimnames-Heatmap-method.rd
man/draw_heatmap_body-Heatmap-method.rd
man/draw_heatmap_legend-HeatmapList-method.rd
man/draw_heatmap_list-HeatmapList-method.rd
man/draw_title-Heatmap-method.rd
man/draw_title-HeatmapList-method.rd
man/draw_title-dispatch.rd
man/enhanced_basicplot.rd
man/get_color_mapping_list-HeatmapAnnotation-method.rd
man/get_color_mapping_param_list-HeatmapAnnotation-method.rd
man/grid.dendrogram.rd
man/heatmap_legend_size-HeatmapList-method.rd
man/ht_global_opt.rd
man/is_abs_unit.rd
man/make_column_cluster-Heatmap-method.rd
man/make_layout-Heatmap-method.rd
man/make_layout-HeatmapList-method.rd
man/make_layout-dispatch.rd
man/make_row_cluster-Heatmap-method.rd
man/map_to_colors-ColorMapping-method.rd
man/max_text_height.rd
man/max_text_width.rd
man/oncoPrint.rd
man/packLegend.rd
man/plotDataFrame.rd
man/prepare-Heatmap-method.rd
man/rowAnnotation.rd
man/row_anno_barplot.rd
man/row_anno_boxplot.rd
man/row_anno_density.rd
man/row_anno_histogram.rd
man/row_anno_link.rd
man/row_anno_points.rd
man/row_anno_text.rd
man/row_dend-Heatmap-method.rd
man/row_dend-HeatmapList-method.rd
man/row_dend-dispatch.rd
man/row_order-Heatmap-method.rd
man/row_order-HeatmapList-method.rd
man/row_order-dispatch.rd
man/selectArea.rd
man/set_component_height-Heatmap-method.rd
man/show-ColorMapping-method.rd
man/show-Heatmap-method.rd
man/show-HeatmapAnnotation-method.rd
man/show-HeatmapList-method.rd
man/show-SingleAnnotation-method.rd
man/show-dispatch.rd
man/unify_mat_list.rd
tests
tests/test-all.R
tests/testthat
tests/testthat/test-ColorMapping-class.R
tests/testthat/test-Heatmap-class.R.nottest
tests/testthat/test-HeatmapAnnotation.R.nottest
tests/testthat/test-HeatmapList-class.R.nottest
tests/testthat/test-SingleAnnotation.R.nottest
tests/testthat/test-anno.R.nottest
tests/testthat/test-utils.R
vignettes
vignettes/custom.css
vignettes/design.R
vignettes/s1.introduction.Rmd
vignettes/s2.single_heatmap.Rmd
vignettes/s3.a_list_of_heatmaps.Rmd
vignettes/s4.heatmap_annotation.Rmd
vignettes/s5.legend.Rmd
vignettes/s6.heatmap_decoration.Rmd
vignettes/s7.interactive.Rmd
vignettes/s8.oncoprint.Rmd
vignettes/s9.examples.Rmd
vignettes/select_region.gif

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