Files in ComplexHeatmap
Make Complex Heatmaps
LICENSE
NEWS
NAMESPACE
DESCRIPTION
logo.R
tests/test-oncoPrint.R
tests/test-utils.R
tests/test-annotation_axis.R
tests/test-Legend.R
tests/test-HeatmapAnnotation.R
tests/test-SingleAnnotation.R
tests/test-gridtext.R
tests/test-multiple-page.R
tests/test-upset.R
tests/test-Heatmap-cluster.R
tests/test-pheatmap.R
tests/test-interactive.R
tests/test-HeatmapList-class.R
tests/test-dendrogram.R
tests/testthat-all.R
tests/test-AnnotationFunction.R
tests/test-Heatmap-class.R
tests/test-ColorMapping-class.R
tests/testthat/testthat-UpSet.R
tests/testthat/testthat-HeatmapAnnotation-size.R
tests/testthat/testthat-ColorMapping.R
tests/testthat/testhat-utiles.R
R/stacked_plot.R
R/Heatmap-class.R
R/is_abs_unit.R
R/HeatmapList-layout.R
R/global.R
R/gridtext.R
R/Upset.R
R/utils.R
R/HeatmapList-get_order.R
R/interactive.R
R/00_size.R
R/Heatmap-draw_component.R
R/grid.dendrogram.R
R/annotation_axis.R
R/AdditiveUnit-class.R
R/AnnotationFunction-class.R
R/SingleAnnotation-class.R
R/Heatmap-utils.R
R/decorate.R
R/HeatmapList-draw_component.R
R/box_align.R
R/temp.R
R/HeatmapList-legends.R
R/oncoPrint.R
R/ColorMapping-class.R
R/HeatmapList-class.R
R/Heatmap-layout.R
R/00_S4_generic_methods.R
R/grid.Legend.R
R/pheatmap_translate.R
R/HeatmapAnnotation-class.R
R/overview.R
R/AnnotationFunction-function.R
R/densityHeatmap.R
R/zzz.R
man/merge_dendrogram.Rd
man/comb_name.Rd
man/anno_oncoprint_barplot.Rd
man/width.SingleAnnotation.Rd
man/add_heatmap-HeatmapList-method.Rd
man/selectArea.Rd
man/component_width-dispatch.Rd
man/draw-AnnotationFunction-method.Rd
man/size.HeatmapAnnotation.Rd
man/copy_all-dispatch.Rd
man/namesAssign.HeatmapAnnotation.Rd
man/decorate_annotation.Rd
man/draw-HeatmapList-method.Rd
man/decorate_heatmap_body.Rd
man/heightAssign.AnnotationFunction.Rd
man/ColorMapping.Rd
man/names.HeatmapAnnotation.Rd
man/row_anno_histogram.Rd
man/draw_heatmap_body-Heatmap-method.Rd
man/draw_heatmap_legend-HeatmapList-method.Rd
man/max_text_height.Rd
man/HeatmapList-class.Rd
man/unify_mat_list.Rd
man/gt_render.Rd
man/c.HeatmapAnnotation.Rd
man/decorate_column_names.Rd
man/get_legend_param_list-HeatmapAnnotation-method.Rd
man/row_order-dispatch.Rd
man/Extract.Heatmap.Rd
man/get_color_mapping_list-HeatmapAnnotation-method.Rd
man/AnnotationFunction-class.Rd
man/draw_title-dispatch.Rd
man/max_text_width.Rd
man/pheatmap.Rd
man/SingleAnnotation.Rd
man/is_abs_unit.Rd
man/prepare-Heatmap-method.Rd
man/grid.boxplot.Rd
man/widthAssign.AnnotationFunction.Rd
man/column_order-Heatmap-method.Rd
man/length.HeatmapAnnotation.Rd
man/Legends-class.Rd
man/grid.draw.Legends.Rd
man/height.HeatmapList.Rd
man/c.ColorMapping.Rd
man/anno_image.Rd
man/show-SingleAnnotation-method.Rd
man/draw-HeatmapAnnotation-method.Rd
man/anno_lines.Rd
man/add_heatmap-HeatmapAnnotation-method.Rd
man/ht_opt.Rd
man/test_alter_fun.Rd
man/widthDetails.annotation_axis.Rd
man/draw_title-Heatmap-method.Rd
man/anno_empty.Rd
man/height.AnnotationFunction.Rd
man/complement_size.Rd
man/Extract.AnnotationFunction.Rd
man/add_heatmap-Heatmap-method.Rd
man/component_width-HeatmapList-method.Rd
man/row_anno_density.Rd
man/row_dend-dispatch.Rd
man/rowAnnotation.Rd
man/decorate_dend.Rd
man/names.HeatmapList.Rd
man/subset_vector.Rd
man/smartAlign2.Rd
man/row_order-Heatmap-method.Rd
man/set_size.Rd
man/nobs.SingleAnnotation.Rd
man/draw-SingleAnnotation-method.Rd
man/annotation_legend_size-HeatmapList-method.Rd
man/grid.annotation_axis.Rd
man/width.HeatmapList.Rd
man/heatmap_legend_size-HeatmapList-method.Rd
man/make_comb_mat.Rd
man/decorate_dimnames.Rd
man/anno_histogram.Rd
man/column_dend-Heatmap-method.Rd
man/anno_zoom.Rd
man/length.HeatmapList.Rd
man/component_width-Heatmap-method.Rd
man/anno_points.Rd
man/ncol.Heatmap.Rd
man/set_nameAssign.Rd
man/HeatmapList.Rd
man/draw-dispatch.Rd
man/ht_global_opt.Rd
man/normalize_comb_mat.Rd
man/AdditiveUnit.Rd
man/column_order-HeatmapList-method.Rd
man/width.HeatmapAnnotation.Rd
man/show-ColorMapping-method.Rd
man/show-dispatch.Rd
man/Heatmap.Rd
man/packLegend.Rd
man/sizeAssign.AnnotationFunction.Rd
man/oncoPrint.Rd
man/anno_link.Rd
man/component_height-HeatmapList-method.Rd
man/Extract.comb_mat.Rd
man/width.Legends.Rd
man/adjust_dend_by_x.Rd
man/show-HeatmapAnnotation-method.Rd
man/full_comb_code.Rd
man/ht_shiny.Rd
man/comb_degree.Rd
man/Heatmap-class.Rd
man/Extract.HeatmapAnnotation.Rd
man/make_layout-HeatmapList-method.Rd
man/ht_pos_on_device.Rd
man/Legend.Rd
man/summary.Heatmap.Rd
man/size.AnnotationFunction.Rd
man/decorate_title.Rd
man/anno_joyplot.Rd
man/heightDetails.annotation_axis.Rd
man/set_component_height-Heatmap-method.Rd
man/default_get_type.Rd
man/Extract.gridtext.Rd
man/heightDetails.legend.Rd
man/draw_annotation_legend-HeatmapList-method.Rd
man/draw-Heatmap-method.Rd
man/t.comb_mat.Rd
man/component_height-Heatmap-method.Rd
man/row_anno_text.Rd
man/SingleAnnotation-class.Rd
man/widthAssign.SingleAnnotation.Rd
man/ht_size.Rd
man/Extract.HeatmapList.Rd
man/copy_all-AnnotationFunction-method.Rd
man/column_dend-dispatch.Rd
man/set_name.Rd
man/annotation_axis_grob.Rd
man/draw_annotation-Heatmap-method.Rd
man/color_mapping_legend-ColorMapping-method.Rd
man/Extract.SingleAnnotation.Rd
man/HeatmapAnnotation-class.Rd
man/draw_heatmap_list-HeatmapList-method.Rd
man/cluster_within_group.Rd
man/size.SingleAnnotation.Rd
man/re_size-HeatmapAnnotation-method.Rd
man/nrow.Heatmap.Rd
man/anno_density.Rd
man/compare_pheatmap.Rd
man/height.Legends.Rd
man/make_layout-Heatmap-method.Rd
man/densityHeatmap.Rd
man/HeatmapAnnotation.Rd
man/copy_all-SingleAnnotation-method.Rd
man/height.HeatmapAnnotation.Rd
man/row_anno_boxplot.Rd
man/map_to_colors-ColorMapping-method.Rd
man/comb_size.Rd
man/default_axis_param.Rd
man/make_column_cluster-Heatmap-method.Rd
man/decorate_column_dend.Rd
man/adjust_heatmap_list-HeatmapList-method.Rd
man/order.comb_mat.Rd
man/make_layout-dispatch.Rd
man/widthDetails.packed_legends.Rd
man/anno_block.Rd
man/Legends.Rd
man/widthDetails.legend_body.Rd
man/show-Heatmap-method.Rd
man/ColorMapping-class.Rd
man/row_anno_barplot.Rd
man/nobs.HeatmapAnnotation.Rd
man/dim.Heatmap.Rd
man/UpSet.Rd
man/getXY_in_parent_vp.Rd
man/decorate_column_title.Rd
man/width.Heatmap.Rd
man/draw_title-HeatmapList-method.Rd
man/draw-Legends-method.Rd
man/row_anno_points.Rd
man/anno_barplot.Rd
man/add.AdditiveUnit.Rd
man/decorate_row_names.Rd
man/ComplexHeatmap-package.Rd
man/column_order-dispatch.Rd
man/grid.dendrogram.Rd
man/anno_text.Rd
man/columnAnnotation.Rd
man/summary.HeatmapList.Rd
man/widthDetails.legend.Rd
man/dend_xy.Rd
man/anno_boxplot.Rd
man/decorate_row_dend.Rd
man/nobs.AnnotationFunction.Rd
man/anno_simple.Rd
man/str.comb_mat.Rd
man/anno_mark.Rd
man/upset_top_annotation.Rd
man/AdditiveUnit-class.Rd
man/alter_graphic.Rd
man/widthAssign.HeatmapAnnotation.Rd
man/set_component_width-Heatmap-method.Rd
man/list_components.Rd
man/sizeAssign.HeatmapAnnotation.Rd
man/show-HeatmapList-method.Rd
man/draw_dend-Heatmap-method.Rd
man/component_height-dispatch.Rd
man/restore_matrix.Rd
man/height.SingleAnnotation.Rd
man/row_dend-HeatmapList-method.Rd
man/decorate_row_title.Rd
man/width.AnnotationFunction.Rd
man/anno_horizon.Rd
man/attach_annotation-Heatmap-method.Rd
man/list_to_matrix.Rd
man/heightDetails.legend_body.Rd
man/print.comb_mat.Rd
man/show-AnnotationFunction-method.Rd
man/pct_v_pct.Rd
man/dist2.Rd
man/upset_right_annotation.Rd
man/subset_gp.Rd
man/selectPosition.Rd
man/make_row_cluster-Heatmap-method.Rd
man/row_dend-Heatmap-method.Rd
man/row_order-HeatmapList-method.Rd
man/heightDetails.packed_legends.Rd
man/add_heatmap-dispatch.Rd
man/dend_heights.Rd
man/sizeAssign.SingleAnnotation.Rd
man/draw_dimnames-Heatmap-method.Rd
man/extract_comb.Rd
man/height.Heatmap.Rd
man/subset_matrix_by_row.Rd
man/AnnotationFunction.Rd
man/heightAssign.SingleAnnotation.Rd
man/column_dend-HeatmapList-method.Rd
man/pindex.Rd
man/dendrogramGrob.Rd
man/anno_summary.Rd
man/heightAssign.HeatmapAnnotation.Rd
inst/CITATION
inst/extdata/sample_order.txt
inst/extdata/meth.rds
inst/extdata/gr.rds
inst/extdata/gene_expression.rds
inst/extdata/generate_random_dataset.R
inst/extdata/dmr_summary.rds
inst/extdata/measles.rds
inst/extdata/tcga_lung_adenocarcinoma_provisional_ras_raf_mek_jnk_signalling.txt
inst/extdata/random_meth_expr_data.RData
inst/extdata/tcga_lung_adenocarcinoma_provisional_ras_raf_mek_jnk_signalling.rds
inst/doc/interactive.Rmd
inst/doc/most_probably_asked_questions.html
inst/doc/interactive.R
inst/doc/complex_heatmap.rmd
inst/doc/most_probably_asked_questions.R
inst/doc/most_probably_asked_questions.Rmd
inst/doc/interactive.html
inst/doc/complex_heatmap.html
inst/app/jquery-ui.js
inst/app/jquery-ui.css
inst/app/app.R
build/vignette.rds
vignettes/interactive.Rmd
vignettes/custom.css
vignettes/complex_heatmap.rmd
vignettes/most_probably_asked_questions.Rmd
