anno_boxplot: Boxplot Annotation

In ComplexHeatmap: Make Complex Heatmaps

Description

Boxplot Annotation

Usage

anno_boxplot(x, which = c("column", "row"), border = TRUE,
    gp = gpar(fill = "#CCCCCC"), ylim = NULL, extend = 0.05, outline = TRUE, box_width = 0.6,
    pch = 1, size = unit(2, "mm"), axis = TRUE, axis_param = default_axis_param(which),
    width = NULL, height = NULL, ...)

Arguments

x	A matrix or a list. If x is a matrix and if which is column, statistics for boxplots are calculated by columns, if which is row, the calculation is done by rows.
which	Whether it is a column annotation or a row annotation?
border	Wether draw borders of the annotation region?
gp	Graphic parameters for the boxes. The length of the graphic parameters should be one or the number of observations.
ylim	Data ranges.
extend	The extension to both side of ylim. The value is a percent value corresponding to ylim[2] - ylim[1].
outline	Whether draw outline of boxplots?
box_width	Relative width of boxes. The value should be smaller than one.
pch	Point style.
size	Point size.
axis	Whether to add axis?
axis_param	parameters for controlling axis. See default_axis_param for all possible settings and default parameters.
width	Width of the annotation. The value should be an absolute unit. Width is not allowed to be set for column annotation.
height	Height of the annotation. The value should be an absolute unit. Height is not allowed to be set for row annotation.
...	Other arguments.

Value

An annotation function which can be used in HeatmapAnnotation.

See Also

https://jokergoo.github.io/ComplexHeatmap-reference/book/heatmap-annotations.html#box-annotation

Examples

set.seed(123)
m = matrix(rnorm(100), 10)
anno = anno_boxplot(m, height = unit(4, "cm"))
draw(anno, test = "anno_boxplot")
anno = anno_boxplot(m, height = unit(4, "cm"), gp = gpar(fill = 1:10))
draw(anno, test = "anno_boxplot with gp")

Example output

Loading required package: grid
========================================
ComplexHeatmap version 2.6.2
Bioconductor page: http://bioconductor.org/packages/ComplexHeatmap/
Github page: https://github.com/jokergoo/ComplexHeatmap
Documentation: http://jokergoo.github.io/ComplexHeatmap-reference

If you use it in published research, please cite:
Gu, Z. Complex heatmaps reveal patterns and correlations in multidimensional 
  genomic data. Bioinformatics 2016.

This message can be suppressed by:
  suppressPackageStartupMessages(library(ComplexHeatmap))
========================================

ComplexHeatmap documentation built on Nov. 14, 2020, 2:01 a.m.