Man pages for CorMut
Detect the correlated mutations based on selection pressure
| biCkaksCodon-class | Class "biCkaksCodon", "biCkaksAA", "biMICodon" and "biMIAA" |
| biCompare-class | Class "biCompare" |
| biCompare-methods | biCompare implement biCompare methods for comparison of the... |
| ckaksAA | Compute the conditional kaks(conditional selection pressure)... |
| ckaks-class | Class "ckaks" |
| ckaksCodon | Compute the conditional kaks(conditional selection pressure)... |
| CorMut-package | Detect the correlated mutations based on selection pressure |
| filterSites-methods | filterSites methods |
| jiAA | Compute the Jaccard index among individual amino mutations |
| JI-class | Class "JI" |
| kaksAA | Compute kaks for individual amino mutation |
| kaksAA-class | Class "kaksAA" |
| kaksCodon | Compute kaks for individual codon |
| kaksCodon-class | Class "kaksCodon" |
| miAA | Compute the mutual information among individual amino... |
| MI-class | Class "MI" |
| miCodon | Compute the mutual information among codons |
| plot-methods | Plot methods for CorMut package |
| seqFormat-methods | Process the multiple sequence alignment files |
