plot-methods: Plot methods for CorMut package

Description Methods Author(s) See Also Examples

Description

Plot implement plot methods for ckaksCodon,ckaksAA,miCodon, miAA and biCompare objects respectively. Plot visualize the mutation correlation among sites or amino mutations.

Methods

x = "ckaks"

Plot the results of ckaks object. The paramater "layout_reset" was provided to set the layout of the network. You can refer to "layout_ function" in igraph package to get the graph layouts

x = "MI"

Plot the results of MI object. The paramater "layout_reset" was provided to set the layout of the network. You can refer to "layout_ function" in igraph package to get the graph layouts

x = "JI"

Plot the results of JI object. The paramater "layout_reset" was provided to set the layout of the network. You can refer to "layout_ function" in igraph package to get the graph layouts

x = "biCompare"

Plot the results of biCompare object. The paramater "layout_reset" was provided to set the layout of the network. You can refer to "layout_ function" in igraph package to get the graph layouts

Author(s)

Zhenpeng Li

See Also

ckaksCodon,ckaksAA,miCodon,miAA,jiAA

Examples

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examplefile=system.file("extdata","PI_treatment.aln",package="CorMut")
example=seqFormat(examplefile)
result=ckaksAA(example)
plot(result)

CorMut documentation built on May 2, 2018, 4 a.m.