Plot methods for CorMut package

Description

Plot implement plot methods for ckaksCodon,ckaksAA,miCodon, miAA and biCompare objects respectively. Plot visualize the mutation correlation among sites or amino mutations.

Methods

x = "ckaks"

Plot the results of ckaks object

x = "MI"

Plot the results of MI object

x = "JI"

Plot the results of JI object

x = "biCompare"

Plot the results of biCompare object

Author(s)

Zhenpeng Li

See Also

ckaksCodon,ckaksAA,miCodon,miAA,jiAA

Examples

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examplefile=system.file("extdata","PI_treatment.aln",package="CorMut")
example=seqFormat(examplefile)
result=ckaksAA(example)
plot(result)