plot-methods: Plot methods for CorMut package

Description Methods Author(s) See Also Examples

Description

Plot implement plot methods for ckaksCodon,ckaksAA,miCodon, miAA and biCompare objects respectively. Plot visualize the mutation correlation among sites or amino mutations.

Methods

x = "ckaks"

Plot the results of ckaks object

x = "MI"

Plot the results of MI object

x = "JI"

Plot the results of JI object

x = "biCompare"

Plot the results of biCompare object

Author(s)

Zhenpeng Li

See Also

ckaksCodon,ckaksAA,miCodon,miAA,jiAA

Examples

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examplefile=system.file("extdata","PI_treatment.aln",package="CorMut")
example=seqFormat(examplefile)
result=ckaksAA(example)
plot(result)


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