Description Slots Methods See Also Examples

JI class for representing the jiAA results

`JI`

:Object of class

`"matrix"`

. Mutual information among codons or amino mutations`p.value`

:Object of class

`"matrix"`

. P value for the significance of correlated mutations`OR`

:Object of class

`"matrix"`

. Odds Ratios for the correlated mutations

- filterSites
`signature(object = "MI")`

: Filter positive selection amino mutations for objects of MI class.- plot
`signature(object = "MI")`

: Plot the influence interaction among mutations for objects of MI class.

1 2 3 | ```
#examplefile=system.file("extdata","PI_treatment.aln",package="CorMut")
#example=seqFormat(examplefile)
#result=jiAA(example)
``` |

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