ckaks-class: Class "ckaks"

Description Slots Methods See Also Examples

Description

ckaks class for representing the ckaksCodon/ckaksAA results

Slots

ckaks:

Object of class "matrix". Conditional kaks among codons or amino mutations

lod:

Object of class "matrix". LOD confidence score indicates the significance of correlated mutations

Methods

filterSites

signature(object = "ckaks"): Filter positive selection amino mutations for objects of ckaks class.

plot

signature(object = "ckaks"): Plot the influence network among mutations for objects of ckaks class.

See Also

filterSites,ckaksCodon,ckaksAA,plot.ckaks

Examples

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#examplefile=system.file("extdata","PI_treatment.aln",package="CorMut")
#example=seqFormat(examplefile)
#result=ckaksAA(example)

CorMut documentation built on May 6, 2019, 4:56 a.m.