API for DChIPRep
DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication
| Global functions | |
|---|---|
| .onAttach | Source code |
| DChIPRep | Man page |
| DChIPRep-package | Man page |
| DChIPRepResults | Man page Source code |
| DChIPRepResults-class | Man page |
| DESeq2Data | Man page |
| DESeq2Data,DChIPRepResults-method | Man page |
| DESeq2Data.DChIPRepResults | Source code |
| DESeq2Data<- | Man page |
| DESeq2Data<-,DChIPRepResults,DESeqDataSet-method | Man page |
| FDRresults | Man page |
| FDRresults,DChIPRepResults-method | Man page |
| FDRresults<- | Man page |
| FDRresults<-,DChIPRepResults,list-method | Man page |
| TSS_galonska | Man page |
| chip_galonska | Man page |
| exampleChipData | Man page |
| exampleInputData | Man page |
| exampleSampleTable | Man page |
| getMATfromDataFrame | Man page Source code |
| importData | Man page Source code |
| importDataFromMatrices | Man page Source code |
| importData_soGGi | Man page Source code |
| input_galonska | Man page |
| plotProfiles | Man page |
| plotProfiles,DChIPRepResults-method | Man page |
| plotProfiles.DChIPRepResults | Source code |
| plotSignificance | Man page |
| plotSignificance,DChIPRepResults-method | Man page |
| plotSignificance.DChIPRepResults | Source code |
| resultsDChIPRep | Man page |
| resultsDChIPRep,DChIPRepResults-method | Man page |
| resultsDChIPRep<- | Man page |
| resultsDChIPRep<-,DChIPRepResults,list-method | Man page |
| robust_mean | Man page Source code |
| runTesting | Man page |
| runTesting,DChIPRepResults-method | Man page |
| runTesting.DChIPRepResults | Source code |
| sample_table_galonska | Man page |
| show | Man page |
| show,DChIPRepResults-method | Man page |
| summarizeCountsPerPosition | Man page Source code |
| testData | Man page |
| testSampleTable | Source code |
