runTesting: Run the tests on a DChIPRepResults object.

Description Usage Arguments Value See Also Examples

Description

This function runs the testing on a DChIPRepResults object. It adds the FDR calculations and the result table to the DChIPRepResults object.

Usage

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## S4 method for signature 'DChIPRepResults'
runTesting(object, lfcThreshold = 0.05,
  plotFDR = FALSE, ...)

Arguments

object

A DChIPRepResults object.

lfcThreshold

A non-negative threshold value, which determines the null hypothesis. The null hypothesis is H_0: |log2(FC)| > lfcThreshold

plotFDR

If set to TRUE a plot showing the estimated FDRs will be displayed

...

not used currently

Value

a modified DChIPRepResults object containing the testing results

See Also

resultsDChIPRep

Examples

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DChIPRep documentation built on Nov. 1, 2018, 2:59 a.m.