Files in DChIPRep
DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication

DESCRIPTION
NAMESPACE
NEWS
LICENCE
data/TSS_galonska.rda
data/testData.rda
data/exampleSampleTable.rda
data/chip_galonska.rda
data/exampleInputData.rda
data/input_galonska.rda
data/exampleChipData.rda
data/sample_table_galonska.rda
exec/DChIPRep.py
build/vignette.rds
tests/testthat.R tests/testthat/test_Testing.R tests/testthat/test_dataImport_soGGi.R tests/testthat/test_dataImport.R tests/testthat/test_plottingFunctions.R tests/testthat/test_testConstructor.R tests/testthat/test_dataInput.R
vignettes/references.bib
vignettes/DChIPRepVignette.Rmd man/TSS_galonska.Rd man/exampleInputData.Rd man/FDRresults.Rd man/sample_table_galonska.Rd man/show.Rd man/plotSignificance.Rd man/chip_galonska.Rd man/summarizeCountsPerPosition.Rd man/resultsDChIPRep.Rd man/runTesting.Rd man/DESeq2Data.Rd man/DChIPRep.Rd man/exampleChipData.Rd man/importData.Rd man/input_galonska.Rd man/importDataFromMatrices.Rd man/testData.Rd man/robust_mean.Rd man/importData_soGGi.Rd man/DChIPRepResults.Rd man/exampleSampleTable.Rd man/getMATfromDataFrame.Rd man/plotProfiles.Rd
inst/REFERENCES.bib
inst/CITATION
inst/doc/DChIPRepVignette.Rmd
inst/doc/DChIPRepVignette.html
inst/doc/DChIPRepVignette.R
inst/extdata/BY_conf_WCE_2__ORF_count.txt
inst/extdata/SET2_conf_K4me3_2__ORF_count.txt
inst/extdata/BY_conf_K4me3_1__ORF_count.txt
inst/extdata/subsampled_0001_pc_SRR2144628_WCE_bowtie2_mapped-only_XS-filt_no-dups.bam
inst/extdata/subsampled_0001_pc_SRR2144628_WCE_bowtie2_mapped-only_XS-filt_no-dups.bam.bai
inst/extdata/SET2_conf_WCE_2__ORF_count.txt
inst/extdata/BY_conf_K4me3_3__ORF_count.txt
inst/extdata/BY_conf_K4me3_2__ORF_count.txt
inst/extdata/SET2_conf_K4me3_1__ORF_count.txt
inst/extdata/SET2_conf_WCE_3__ORF_count.txt
inst/extdata/BY_conf_WCE_1__ORF_count.txt
inst/extdata/BY_conf_WCE_3__ORF_count.txt
inst/extdata/SET2_conf_WCE_1__ORF_count.txt
inst/extdata/SET2_conf_K4me3_3__ORF_count.txt
R/DChipRep.R R/plottingFunctions.R R/runTesting.R R/AllClasses.R R/methods.R R/AllGenerics.R R/documentData.R R/dataImportsoGGi.R R/dataImport.R
DChIPRep documentation built on Nov. 17, 2017, 10:08 a.m.